|
|
| (2 intermediate revisions not shown.) |
| Line 1: |
Line 1: |
| | | | |
| | ==Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium melilot== | | ==Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium melilot== |
| - | <StructureSection load='1x3u' size='340' side='right' caption='[[1x3u]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='1x3u' size='340' side='right'caption='[[1x3u]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1x3u]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_9930 Atcc 9930]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X3U OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1X3U FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1x3u]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sinorhizobium_meliloti Sinorhizobium meliloti]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1X3U OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1X3U FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">fixJ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=382 ATCC 9930])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1x3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x3u OCA], [http://pdbe.org/1x3u PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1x3u RCSB], [http://www.ebi.ac.uk/pdbsum/1x3u PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1x3u ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1x3u FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1x3u OCA], [https://pdbe.org/1x3u PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1x3u RCSB], [https://www.ebi.ac.uk/pdbsum/1x3u PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1x3u ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/FIXJ_RHIME FIXJ_RHIME]] FixJ, when activated by FixL, induces the expression of both nifA, required for activation of classical nif and fix genes, and fixK, required for FixN activation. | + | [https://www.uniprot.org/uniprot/FIXJ_RHIME FIXJ_RHIME] FixJ, when activated by FixL, induces the expression of both nifA, required for activation of classical nif and fix genes, and fixK, required for FixN activation. |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| Line 32: |
Line 32: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 9930]] | + | [[Category: Large Structures]] |
| - | [[Category: Hosono, K]] | + | [[Category: Sinorhizobium meliloti]] |
| - | [[Category: Isogai, M]] | + | [[Category: Hosono K]] |
| - | [[Category: Ito, Y]] | + | [[Category: Isogai M]] |
| - | [[Category: Kasai, Y]] | + | [[Category: Ito Y]] |
| - | [[Category: Kurashima-Ito, K]] | + | [[Category: Kasai Y]] |
| - | [[Category: Nakamura, H]] | + | [[Category: Kurashima-Ito K]] |
| - | [[Category: Oue, S]] | + | [[Category: Nakamura H]] |
| - | [[Category: Shiro, Y]] | + | [[Category: Oue S]] |
| - | [[Category: Tamura, K]] | + | [[Category: Shiro Y]] |
| - | [[Category: Helix-turn-helix]]
| + | [[Category: Tamura K]] |
| - | [[Category: Transcription]]
| + | |
| Structural highlights
Function
FIXJ_RHIME FixJ, when activated by FixL, induces the expression of both nifA, required for activation of classical nif and fix genes, and fixK, required for FixN activation.
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
FixJ is a response regulator of the two-component signal transduction pathway involved in the transcriptional activation of nitrogen fixation genes of Sinorhizobium meliloti. Upon phosphorylation, FixJ transcriptionally activates the fixK and nifA promoters. We identified a FixJ recognition sequence of 16 bp in the high affinity binding site of the fixK promoter by means of a gel shift assay. In addition, the solution structure of the truncated C-terminal DNA binding domain of FixJ (FixJC) was solved by NMR spectroscopy. FixJC contains five alpha-helices that encode a typical helix-turn-helix motif as a potential DNA binding core with the highest structural similarity toward the C-terminal DNA binding domain of NarL. The addition of the DNA fragment containing the recognition sequence of the high affinity FixJ binding site resulted in intermediate to slow exchange interactions on the NMR time scale in the spectrum of FixJC, while the exchange was rapid in the case of control DNA. These spectral data suggest that more than one molecule of FixJC binds to the recognition sequence, although FixJC alone is present in monomeric form in solution. This result is consistent with a scenario in which a transcriptionally active species of FixJ is a homodimer of the phosphorylated form.
Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter.,Kurashima-Ito K, Kasai Y, Hosono K, Tamura K, Oue S, Isogai M, Ito Y, Nakamura H, Shiro Y Biochemistry. 2005 Nov 15;44(45):14835-44. PMID:16274231[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Kurashima-Ito K, Kasai Y, Hosono K, Tamura K, Oue S, Isogai M, Ito Y, Nakamura H, Shiro Y. Solution structure of the C-terminal transcriptional activator domain of FixJ from Sinorhizobium meliloti and its recognition of the fixK promoter. Biochemistry. 2005 Nov 15;44(45):14835-44. PMID:16274231 doi:10.1021/bi0509043
|
