5zo1

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
m (Protected "5zo1" [edit=sysop:move=sysop])
Current revision (12:24, 6 November 2024) (edit) (undo)
 
(4 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 5zo1 is ON HOLD
+
==Crystal structure of mouse nectin-like molecule 4 (mNecl-4) full ectodomain (Ig1-Ig3), 2.2A==
 +
<StructureSection load='5zo1' size='340' side='right'caption='[[5zo1]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[5zo1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ZO1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ZO1 FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.201&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FUC:ALPHA-L-FUCOSE'>FUC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5zo1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5zo1 OCA], [https://pdbe.org/5zo1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5zo1 RCSB], [https://www.ebi.ac.uk/pdbsum/5zo1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5zo1 ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/CADM4_MOUSE CADM4_MOUSE] Involved in the cell-cell adhesion. Has calcium- and magnesium-independent cell-cell adhesion activity. May have tumor-suppressor activity.<ref>PMID:14659875</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
Nectin-like (Necl) molecules are Ca(2+)-independent Ig-like transmembrane cell adhesion molecules that participate in junctions between different cell types. The specific cell-cell adhesions mediated by Necl proteins are important in neural development and have been implicated in neurodegenerative diseases. Here, we present the crystal structure of the mouse Necl-4 full ectodomain and the structure of the heterophilic Necl ectodomain complex formed by the mNecl-4 and mNecl-1 ectodomains. We demonstrate that, while the ectodomain of mNecl-4 is monomeric, it forms a stable heterodimer with Ig1 of mNecl-1, with an affinity significantly higher than that observed for self-dimerization of the mNecl-1 ectodomain. We validated our structural characterizations by performing a surface plasmon resonance assay and an Fc fusion protein binding assay in mouse primary dorsal root ganglia neurites and Schwann cells and identified a selection of residues important for heterophilic interactions. Finally, we proposed a model of Necl binding specificity that involves an induced-fit conformational change at the dimerization interface.
-
Authors: Xiaozhong Peng, Sheng Cui, Dongdong LI, Tai An
+
Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules.,Liu X, An T, Li D, Fan Z, Xiang P, Li C, Ju W, Li J, Hu G, Qin B, Yin B, Wojdyla JA, Wang M, Yuan J, Qiang B, Shu P, Cui S, Peng X Proc Natl Acad Sci U S A. 2019 Feb 5;116(6):2068-2077. doi:, 10.1073/pnas.1810969116. Epub 2019 Jan 23. PMID:30674679<ref>PMID:30674679</ref>
-
Description: Mouse cellular adhesion molecule extracellular domain(D1-D3)
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Xiaozhong Peng, Sheng Cui, Dongdong Li, Tai An]]
+
<div class="pdbe-citations 5zo1" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Mus musculus]]
 +
[[Category: An T]]
 +
[[Category: Cui S]]
 +
[[Category: Fan Z]]
 +
[[Category: Hu G]]
 +
[[Category: Ju W]]
 +
[[Category: Li C]]
 +
[[Category: Li D]]
 +
[[Category: Li J]]
 +
[[Category: Liu X]]
 +
[[Category: Peng X]]
 +
[[Category: Qiang B]]
 +
[[Category: Qin B]]
 +
[[Category: Shu P]]
 +
[[Category: Wang M]]
 +
[[Category: Wojdyla JA]]
 +
[[Category: Xiang P]]
 +
[[Category: Yin B]]
 +
[[Category: Yuan J]]

Current revision

Crystal structure of mouse nectin-like molecule 4 (mNecl-4) full ectodomain (Ig1-Ig3), 2.2A

PDB ID 5zo1

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools