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| | ==NMR structure of the synthetic penaeidin 4== | | ==NMR structure of the synthetic penaeidin 4== |
| - | <StructureSection load='1xv3' size='340' side='right' caption='[[1xv3]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''> | + | <StructureSection load='1xv3' size='340' side='right'caption='[[1xv3]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[1xv3]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XV3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1XV3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1xv3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Penaeus_setiferus Penaeus setiferus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1XV3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1XV3 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1xv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xv3 OCA], [http://pdbe.org/1xv3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1xv3 RCSB], [http://www.ebi.ac.uk/pdbsum/1xv3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1xv3 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1xv3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1xv3 OCA], [https://pdbe.org/1xv3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1xv3 RCSB], [https://www.ebi.ac.uk/pdbsum/1xv3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1xv3 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/PEN4D_LITSE PEN4D_LITSE]] Antibacterial and antifungal activity. Presents chitin-binding activity (By similarity). | + | [https://www.uniprot.org/uniprot/PEN4D_PENST PEN4D_PENST] Antibacterial and antifungal activity. Presents chitin-binding activity (By similarity). |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Aumelas, A]] | + | [[Category: Large Structures]] |
| - | [[Category: Bachere, E]] | + | [[Category: Penaeus setiferus]] |
| - | [[Category: Bullesbach, E E]] | + | [[Category: Aumelas A]] |
| - | [[Category: Cuthbertson, B J]] | + | [[Category: Bachere E]] |
| - | [[Category: Gross, P S]] | + | [[Category: Bullesbach EE]] |
| - | [[Category: Yang, Y]] | + | [[Category: Cuthbertson BJ]] |
| - | [[Category: Antibiotic]] | + | [[Category: Gross PS]] |
| - | [[Category: Antifungal peptide]] | + | [[Category: Yang Y]] |
| - | [[Category: Antimicrobial peptide]]
| + | |
| - | [[Category: Cysteine-rich]]
| + | |
| - | [[Category: Disulfide bond]]
| + | |
| - | [[Category: Oxidative folding]]
| + | |
| - | [[Category: Penaeidin]]
| + | |
| - | [[Category: Proline-rich]]
| + | |
| - | [[Category: Shrimp]]
| + | |
| Structural highlights
Function
PEN4D_PENST Antibacterial and antifungal activity. Presents chitin-binding activity (By similarity).
Publication Abstract from PubMed
Antimicrobial peptide structure has direct implications for the complexity of functions and mechanisms of action. The penaeidin antimicrobial peptide family from shrimp is divided into multiple class designations based on primary structure. The penaeidin classes are not only characterized by variability in primary sequence but also by variation in target specificity and effectiveness. Whereas class 4 exhibits low isoform diversity within species and is highly conserved between species, the primary sequence of penaeidin class 3 is less conserved between species and exhibits considerable isoform diversity within species. All penaeidins, regardless of class or species, are composed of two dramatically different domains: an unconstrained proline-rich domain and a disulfide bond-stabilized cysteine-rich domain. The proline-rich domain varies in length and is generally less conserved, whereas the spacing and specific residue content of the cysteine-rich domain is more conserved. The structure of the synthetic penaeidin class 4 (PEN4-1) from Litopenaeus setiferus was analyzed using several approaches, including chemical mapping of disulfide bonds, circular dichroism analysis of secondary structural characteristics, and complete characterization of the solution structure of the peptide by proton NMR. L. setiferus PEN4-1 was then compared with the previously characterized structure of penaeidin class 3 from Litopenaeus vannamei. Moreover, the specificity of these antimicrobial peptides was examined through direct comparison of activity against a panel of microbes. The penaeidin classes differ in microbial target specificity, which correlates to variability in specific domain sequence. However, the tertiary structure of the cysteine-rich domain and indeed the overall structure of penaeidins are conserved across classes.
Solution structure of synthetic penaeidin-4 with structural and functional comparisons with penaeidin-3.,Cuthbertson BJ, Yang Y, Bachere E, Bullesbach EE, Gross PS, Aumelas A J Biol Chem. 2005 Apr 22;280(16):16009-18. Epub 2005 Feb 7. PMID:15699044[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Cuthbertson BJ, Yang Y, Bachere E, Bullesbach EE, Gross PS, Aumelas A. Solution structure of synthetic penaeidin-4 with structural and functional comparisons with penaeidin-3. J Biol Chem. 2005 Apr 22;280(16):16009-18. Epub 2005 Feb 7. PMID:15699044 doi:http://dx.doi.org/M412420200
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