2hbt

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:09, 6 November 2024) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hbt.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor==
-
|PDB= 2hbt |SIZE=350|CAPTION= <scene name='initialview01'>2hbt</scene>, resolution 1.600&Aring;
+
<StructureSection load='2hbt' size='340' side='right'caption='[[2hbt]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=UN9:N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE'>UN9</scene>
+
<table><tr><td colspan='2'>[[2hbt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HBT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HBT FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
-
|GENE= EGLN1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 Homo sapiens])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=UN9:N-[(1-CHLORO-4-HYDROXYISOQUINOLIN-3-YL)CARBONYL]GLYCINE'>UN9</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hbt OCA], [https://pdbe.org/2hbt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hbt RCSB], [https://www.ebi.ac.uk/pdbsum/2hbt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hbt ProSAT]</span></td></tr>
-
|RELATEDENTRY=[[2hbu|2HBU]]
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hbt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hbt OCA], [http://www.ebi.ac.uk/pdbsum/2hbt PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2hbt RCSB]</span>
+
== Disease ==
-
}}
+
[https://www.uniprot.org/uniprot/EGLN1_HUMAN EGLN1_HUMAN] Defects in EGLN1 are the cause of familial erythrocytosis type 3 (ECYT3) [MIM:[https://omim.org/entry/609820 609820]. ECYT3 is an autosomal dominant disorder characterized by increased serum red blood cell mass, elevated serum hemoglobin and hematocrit, and normal serum erythropoietin levels.<ref>PMID:16407130</ref> <ref>PMID:17579185</ref>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/EGLN1_HUMAN EGLN1_HUMAN] Cellular oxygen sensor that catalyzes, under normoxic conditions, the post-translational formation of 4-hydroxyproline in hypoxia-inducible factor (HIF) alpha proteins. Hydroxylates a specific proline found in each of the oxygen-dependent degradation (ODD) domains (N-terminal, NODD, and C-terminal, CODD) of HIF1A. Also hydroxylates HIF2A. Has a preference for the CODD site for both HIF1A and HIF1B. Hydroxylated HIFs are then targeted for proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Under hypoxic conditions, the hydroxylation reaction is attenuated allowing HIFs to escape degradation resulting in their translocation to the nucleus, heterodimerization with HIF1B, and increased expression of hypoxy-inducible genes. EGLN1 is the most important isozyme under normoxia and, through regulating the stability of HIF1, involved in various hypoxia-influenced processes such as angiogenesis in retinal and cardiac functionality.<ref>PMID:11595184</ref> <ref>PMID:12351678</ref> <ref>PMID:15897452</ref> <ref>PMID:19339211</ref> <ref>PMID:21792862</ref>
 +
== Evolutionary Conservation ==
 +
[[Image:Consurf_key_small.gif|200px|right]]
 +
Check<jmol>
 +
<jmolCheckbox>
 +
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hb/2hbt_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hbt ConSurf].
 +
<div style="clear:both"></div>
-
'''Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor'''
+
==See Also==
-
 
+
*[[Polyl hydroxylase domain 3D structures|Polyl hydroxylase domain 3D structures]]
-
 
+
== References ==
-
==Disease==
+
<references/>
-
Known disease associated with this structure: Erythrocytosis, familial, 3 OMIM:[[http://www.ncbi.nlm.nih.gov/entrez/dispomim.cgi?id=606425 606425]]
+
__TOC__
-
 
+
</StructureSection>
-
==About this Structure==
+
-
2HBT is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HBT OCA].
+
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
-
[[Category: Single protein]]
+
[[Category: Large Structures]]
-
[[Category: Boyer, A.]]
+
[[Category: Boyer A]]
-
[[Category: Evdokimov, A G.]]
+
[[Category: Evdokimov AG]]
-
[[Category: Kawamoto, R.]]
+
[[Category: Kawamoto R]]
-
[[Category: Mekel, M.]]
+
[[Category: Mekel M]]
-
[[Category: Pokross, M E.]]
+
[[Category: Pokross ME]]
-
[[Category: Walter, R L.]]
+
[[Category: Walter RL]]
-
[[Category: 2-oxoglutarate]]
+
-
[[Category: egln]]
+
-
[[Category: hif]]
+
-
[[Category: hypoxia inducible factor]]
+
-
[[Category: oxygenase]]
+
-
[[Category: prolyl hydroxylase]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:28:16 2008''
+

Current revision

Crystal structure of HIF prolyl hydroxylase EGLN-1 in complex with a biologically active inhibitor

PDB ID 2hbt

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools