This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ylp

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:58, 23 August 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Atomic resolution structure of CTX-M-27 beta-lactamase==
==Atomic resolution structure of CTX-M-27 beta-lactamase==
-
<StructureSection load='1ylp' size='340' side='right' caption='[[1ylp]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
+
<StructureSection load='1ylp' size='340' side='right'caption='[[1ylp]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1ylp]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1YLP FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1ylp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YLP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YLP FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=SUC:SUCROSE'>SUC</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1lyp|1lyp]], [[1ylj|1ylj]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FRU:FRUCTOSE'>FRU</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900003:sucrose'>PRD_900003</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CTX-M ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ylp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ylp OCA], [https://pdbe.org/1ylp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ylp RCSB], [https://www.ebi.ac.uk/pdbsum/1ylp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ylp ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-lactamase Beta-lactamase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.2.6 3.5.2.6] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ylp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ylp OCA], [http://pdbe.org/1ylp PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1ylp RCSB], [http://www.ebi.ac.uk/pdbsum/1ylp PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1ylp ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q840M4_ECOLX Q840M4_ECOLX]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 31: Line 31:
==See Also==
==See Also==
-
*[[Beta-lactamase|Beta-lactamase]]
+
*[[Beta-lactamase 3D structures|Beta-lactamase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Beta-lactamase]]
+
[[Category: Large Structures]]
-
[[Category: Bonnet, R]]
+
[[Category: Bonnet R]]
-
[[Category: Chen, Y]]
+
[[Category: Chen Y]]
-
[[Category: Delmas, J]]
+
[[Category: Delmas J]]
-
[[Category: Shoichet, B]]
+
[[Category: Shoichet B]]
-
[[Category: Sirot, J]]
+
[[Category: Sirot J]]
-
[[Category: Anisotropy]]
+
-
[[Category: Ctx-m]]
+
-
[[Category: Extended-spectrum]]
+
-
[[Category: Hydrolase]]
+

Current revision

Atomic resolution structure of CTX-M-27 beta-lactamase

PDB ID 1ylp

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools