6gf0
From Proteopedia
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- | '''Unreleased structure''' | ||
- | + | ==Lysozyme structure determined from SFX data using a Sheet-on-Sheet chipless chip== | |
+ | <StructureSection load='6gf0' size='340' side='right' caption='[[6gf0]], [[Resolution|resolution]] 2.07Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6gf0]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GF0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6GF0 FirstGlance]. <br> | ||
+ | </td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6gf0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gf0 OCA], [http://pdbe.org/6gf0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6gf0 RCSB], [http://www.ebi.ac.uk/pdbsum/6gf0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6gf0 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref> | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Crystallography chips are fixed-target supports consisting of a film (for example Kapton) or wafer (for example silicon) that is processed using semiconductor-microfabrication techniques to yield an array of wells or through-holes in which single microcrystals can be lodged for raster-scan probing. Although relatively expensive to fabricate, chips offer an efficient means of high-throughput sample presentation for serial diffraction data collection at synchrotron or X-ray free-electron laser (XFEL) sources. Truly efficient loading of a chip (one microcrystal per well and no wastage during loading) is nonetheless challenging. The wells or holes must match the microcrystal size of interest, requiring that a large stock of chips be maintained. Raster scanning requires special mechanical drives to step the chip rapidly and with micrometre precision from well to well. Here, a `chip-less' adaptation is described that essentially eliminates the challenges of loading and precision scanning, albeit with increased, yet still relatively frugal, sample usage. The device consists simply of two sheets of Mylar with the crystal solution sandwiched between them. This sheet-on-sheet (SOS) sandwich structure has been employed for serial femtosecond crystallography data collection with micrometre-sized crystals at an XFEL. The approach is also well suited to time-resolved pump-probe experiments, in particular for long time delays. The SOS sandwich enables measurements under XFEL beam conditions that would damage conventional chips, as documented here. The SOS sheets hermetically seal the sample, avoiding desiccation of the sample provided that the X-ray beam does not puncture the sheets. This is the case with a synchrotron beam but not with an XFEL beam. In the latter case, desiccation, setting radially outwards from each punched hole, sets lower limits on the speed and line spacing of the raster scan. It is shown that these constraints are easily accommodated. | ||
- | + | Crystallography on a chip - without the chip: sheet-on-sheet sandwich.,Doak RB, Nass Kovacs G, Gorel A, Foucar L, Barends TRM, Grunbein ML, Hilpert M, Kloos M, Roome CM, Shoeman RL, Stricker M, Tono K, You D, Ueda K, Sherrell DA, Owen RL, Schlichting I Acta Crystallogr D Struct Biol. 2018 Oct 1;74(Pt 10):1000-1007. doi:, 10.1107/S2059798318011634. Epub 2018 Oct 2. PMID:30289410<ref>PMID:30289410</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 6gf0" style="background-color:#fffaf0;"></div> |
- | [[Category: | + | == References == |
- | [[Category: | + | <references/> |
- | [[Category: | + | __TOC__ |
+ | </StructureSection> | ||
+ | [[Category: Gallus gallus]] | ||
+ | [[Category: Lysozyme]] | ||
+ | [[Category: Barends, T R.M]] | ||
+ | [[Category: Doak, R B]] | ||
+ | [[Category: Foucar, L]] | ||
[[Category: Gorel, A]] | [[Category: Gorel, A]] | ||
- | [[Category: | + | [[Category: Gruenbein, M L]] |
- | [[Category: | + | [[Category: Hilpert, M]] |
[[Category: Kloos, M]] | [[Category: Kloos, M]] | ||
- | [[Category: | + | [[Category: Kovacs, G Nass]] |
- | [[Category: | + | [[Category: Owen, R]] |
+ | [[Category: Roome, C]] | ||
[[Category: Schlichting, I]] | [[Category: Schlichting, I]] | ||
- | [[Category: | + | [[Category: Sherrel, D]] |
- | [[Category: | + | [[Category: Shoeman, R L]] |
- | [[Category: | + | [[Category: Stricker, M]] |
+ | [[Category: Tono, K]] | ||
[[Category: Ueda, K]] | [[Category: Ueda, K]] | ||
- | [[Category: | + | [[Category: You, D]] |
- | [[Category: | + | [[Category: Chip crystallography]] |
+ | [[Category: Free-electron laser]] | ||
+ | [[Category: Hydrolase]] | ||
+ | [[Category: Serial crystallography]] |
Current revision
Lysozyme structure determined from SFX data using a Sheet-on-Sheet chipless chip
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Categories: Gallus gallus | Lysozyme | Barends, T R.M | Doak, R B | Foucar, L | Gorel, A | Gruenbein, M L | Hilpert, M | Kloos, M | Kovacs, G Nass | Owen, R | Roome, C | Schlichting, I | Sherrel, D | Shoeman, R L | Stricker, M | Tono, K | Ueda, K | You, D | Chip crystallography | Free-electron laser | Hydrolase | Serial crystallography