2hze

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (01:02, 21 November 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2hze.gif|left|200px]]
 
-
{{Structure
+
==Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes==
-
|PDB= 2hze |SIZE=350|CAPTION= <scene name='initialview01'>2hze</scene>, resolution 1.80&Aring;
+
<StructureSection load='2hze' size='340' side='right'caption='[[2hze]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=CAS:S-(DIMETHYLARSENIC)CYSTEINE'>CAS</scene>
+
<table><tr><td colspan='2'>[[2hze]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ectromelia_virus_Moscow Ectromelia virus Moscow]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HZE FirstGlance]. <br>
-
|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Glutathione_dehydrogenase_(ascorbate) Glutathione dehydrogenase (ascorbate)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.5.1 1.8.5.1] </span>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE= EVM053 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=12643 Ectromelia virus])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CAS:S-(DIMETHYLARSENIC)CYSTEINE'>CAS</scene></td></tr>
-
|DOMAIN=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hze OCA], [https://pdbe.org/2hze PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hze RCSB], [https://www.ebi.ac.uk/pdbsum/2hze PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hze ProSAT]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hze FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hze OCA], [http://www.ebi.ac.uk/pdbsum/2hze PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2hze RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/GLRX1_ECTVM GLRX1_ECTVM] Has thioltransferase and dehydroascorbate reductase activities (By similarity).
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==Overview==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hz/2hze_consurf.spt"</scriptWhenChecked>
 +
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
 +
<text>to colour the structure by Evolutionary Conservation</text>
 +
</jmolCheckbox>
 +
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2hze ConSurf].
 +
<div style="clear:both"></div>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
Glutaredoxins act as reducing agents for the large subunit of ribonucleotide reductase (R1) in many prokaryotes and eukaryotes, including humans. The same relationship has been proposed for the glutaredoxin and R1 proteins expressed by all orthopoxviruses, including vaccinia, variola, and ectromelia virus. Interestingly, the orthopoxviral proteins share 45% and 78% sequence identity with human glutaredoxin-1 (Grx-1) and R1, respectively. To study structure-function relationships of the vertebrate Grx-1 family, and reveal potential viral adaptations, we have determined crystal structures of the ectromelia virus glutaredoxin, EVM053, in the oxidized and reduced states. The structures show a large redox-induced conformational rearrangement of Tyr21 and Thr22 near the active site. We predict that the movement of Tyr21 is a viral-specific adaptation that increases the redox potential by stabilizing the reduced state. The conformational switch of Thr22 appears to be shared by vertebrate Grx-1 and may affect the strictly conserved Lys20. A crystal packing-induced structural change in residues 68-70 affects the GSH-binding loop, and our structures reveal a potential interaction network that connects the GSH-binding loop and the active site. EVM053 also exhibits a novel cis-proline (Pro53) in a loop that has been shown to contribute to R1-binding in Escherichia coli Grx-1. The cis-peptide bond of Pro53 may be required to promote electrostatic interactions between Lys52 and the C-terminal carboxylate of R1. Finally, dimethylarsenite was covalently attached to Cys23 in one reduced EVM053 structure and our preliminary data show that EVM053 has dimethylarsenate reductase activity.
Glutaredoxins act as reducing agents for the large subunit of ribonucleotide reductase (R1) in many prokaryotes and eukaryotes, including humans. The same relationship has been proposed for the glutaredoxin and R1 proteins expressed by all orthopoxviruses, including vaccinia, variola, and ectromelia virus. Interestingly, the orthopoxviral proteins share 45% and 78% sequence identity with human glutaredoxin-1 (Grx-1) and R1, respectively. To study structure-function relationships of the vertebrate Grx-1 family, and reveal potential viral adaptations, we have determined crystal structures of the ectromelia virus glutaredoxin, EVM053, in the oxidized and reduced states. The structures show a large redox-induced conformational rearrangement of Tyr21 and Thr22 near the active site. We predict that the movement of Tyr21 is a viral-specific adaptation that increases the redox potential by stabilizing the reduced state. The conformational switch of Thr22 appears to be shared by vertebrate Grx-1 and may affect the strictly conserved Lys20. A crystal packing-induced structural change in residues 68-70 affects the GSH-binding loop, and our structures reveal a potential interaction network that connects the GSH-binding loop and the active site. EVM053 also exhibits a novel cis-proline (Pro53) in a loop that has been shown to contribute to R1-binding in Escherichia coli Grx-1. The cis-peptide bond of Pro53 may be required to promote electrostatic interactions between Lys52 and the C-terminal carboxylate of R1. Finally, dimethylarsenite was covalently attached to Cys23 in one reduced EVM053 structure and our preliminary data show that EVM053 has dimethylarsenate reductase activity.
-
==About this Structure==
+
Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes.,Bacik JP, Hazes B J Mol Biol. 2007 Feb 2;365(5):1545-58. Epub 2006 Nov 6. PMID:17137595<ref>PMID:17137595</ref>
-
2HZE is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Ectromelia_virus Ectromelia virus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HZE OCA].
+
-
 
+
-
==Reference==
+
-
Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes., Bacik JP, Hazes B, J Mol Biol. 2007 Feb 2;365(5):1545-58. Epub 2006 Nov 6. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17137595 17137595]
+
-
[[Category: Ectromelia virus]]
+
-
[[Category: Glutathione dehydrogenase (ascorbate)]]
+
-
[[Category: Protein complex]]
+
-
[[Category: Bacik, J P.]]
+
-
[[Category: Hazes, B.]]
+
-
[[Category: arsenic]]
+
-
[[Category: dimethylarsenite.]]
+
-
[[Category: thioredoxin fold]]
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:37:37 2008''
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 2hze" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Ectromelia virus Moscow]]
 +
[[Category: Large Structures]]
 +
[[Category: Bacik JP]]
 +
[[Category: Hazes B]]

Current revision

Crystal structures of a poxviral glutaredoxin in the oxidized and reduced states show redox-correlated structural changes

PDB ID 2hze

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools