6ghb
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6ghb is ON HOLD Authors: Awad, W., Logan, D.T., von Wachenfeldt, C. Description: Crystal structure of Spx in complex with YjbH (oxidized) [[Categor...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of Spx in complex with YjbH (oxidized)== | |
| + | <StructureSection load='6ghb' size='340' side='right'caption='[[6ghb]], [[Resolution|resolution]] 3.10Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6ghb]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168] and [https://en.wikipedia.org/wiki/Geobacillus_kaustophilus_HTA426 Geobacillus kaustophilus HTA426]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GHB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6GHB FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.104Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ghb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ghb OCA], [https://pdbe.org/6ghb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ghb RCSB], [https://www.ebi.ac.uk/pdbsum/6ghb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ghb ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/SPX_BACSU SPX_BACSU] Interferes with activator-stimulated transcription by interaction with the RNA polymerase alpha-CTD. May function to globally reduce transcription of genes involved in growth- and development-promoting processes and to increase transcription of genes involved in thiol homeostasis, during periods of extreme stress. Negatively affects competence and sporulation. Its degradation by the MecA/ClpXP complex is needed for competence development.<ref>PMID:11703662</ref> <ref>PMID:12642660</ref> | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | YjbH is a bacterial adaptor protein required for efficient proteolysis of the RNA polymerase-binding transcription factor Spx by the ClpXP protease. We report the structure of YjbH in complex with Spx. YjbH comprises a DsbA-like thioredoxin domain connected via a linker to a C-terminal domain reminiscent of the winged helix-turn-helix fold. The interaction between YjbH and Spx involves a large surface area. Binding to YjbH stabilizes the C-terminal ClpX recognition region of Spx. We show that mutation of critical YjbH contact residues abrogates Spx recognition. Small-angle X-ray scattering and hydrogen-deuterium exchange mass spectrometry analyses determined the existence of a stable heterodimeric complex in solution and provide evidence that binding of Spx to YjbH reduces the overall conformational flexibility of Spx. Our findings provide insights into the molecular basis for Spx recognition and suggest a model for how YjbH stabilizes Spx and displays the C terminus of Spx for engagement by ClpXP. | ||
| - | + | Structural Basis for YjbH Adaptor-Mediated Recognition of Transcription Factor Spx.,Awad W, Al-Eryani Y, Ekstrom S, Logan DT, von Wachenfeldt C Structure. 2019 Apr 3. pii: S0969-2126(19)30087-5. doi:, 10.1016/j.str.2019.03.009. PMID:30982633<ref>PMID:30982633</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 6ghb" style="background-color:#fffaf0;"></div> |
| - | [[Category: | + | == References == |
| - | [[Category: Awad | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Bacillus subtilis subsp. subtilis str. 168]] | ||
| + | [[Category: Geobacillus kaustophilus HTA426]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Awad W]] | ||
| + | [[Category: Logan DT]] | ||
| + | [[Category: Von Wachenfeldt C]] | ||
Current revision
Crystal structure of Spx in complex with YjbH (oxidized)
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