6c1p

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:54, 4 October 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==HypoPP mutant==
==HypoPP mutant==
-
<StructureSection load='6c1p' size='340' side='right' caption='[[6c1p]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='6c1p' size='340' side='right'caption='[[6c1p]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6c1p]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C1P OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6C1P FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6c1p]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aliarcobacter_butzleri_RM4018 Aliarcobacter butzleri RM4018]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6C1P OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6C1P FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1N7:CHAPSO'>1N7</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6c1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c1p OCA], [http://pdbe.org/6c1p PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6c1p RCSB], [http://www.ebi.ac.uk/pdbsum/6c1p PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6c1p ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1N7:CHAPSO'>1N7</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=PX4:1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE'>PX4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6c1p FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6c1p OCA], [https://pdbe.org/6c1p PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6c1p RCSB], [https://www.ebi.ac.uk/pdbsum/6c1p PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6c1p ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A8EVM5_ALIB4 A8EVM5_ALIB4]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
-
Voltage-gated sodium (Na(V)) channels initiate electrical signalling in excitable cells and are the molecular targets for drugs and disease mutations, but the structural basis for their voltage-dependent activation, ion selectivity and drug block is unknown. Here we report the crystal structure of a voltage-gated Na(+) channel from Arcobacter butzleri (NavAb) captured in a closed-pore conformation with four activated voltage sensors at 2.7 A resolution. The arginine gating charges make multiple hydrophilic interactions within the voltage sensor, including unanticipated hydrogen bonds to the protein backbone. Comparisons to previous open-pore potassium channel structures indicate that the voltage-sensor domains and the S4-S5 linkers dilate the central pore by pivoting together around a hinge at the base of the pore module. The NavAb selectivity filter is short, approximately 4.6 A wide, and water filled, with four acidic side chains surrounding the narrowest part of the ion conduction pathway. This unique structure presents a high-field-strength anionic coordination site, which confers Na(+) selectivity through partial dehydration via direct interaction with glutamate side chains. Fenestrations in the sides of the pore module are unexpectedly penetrated by fatty acyl chains that extend into the central cavity, and these portals are large enough for the entry of small, hydrophobic pore-blocking drugs. This structure provides the template for understanding electrical signalling in excitable cells and the actions of drugs used for pain, epilepsy and cardiac arrhythmia at the atomic level.
+
Potassium-sensitive hypokalaemic and normokalaemic periodic paralysis are inherited skeletal muscle diseases characterized by episodes of flaccid muscle weakness(1,2). They are caused by single mutations in positively charged residues ('gating charges') in the S4 transmembrane segment of the voltage sensor of the voltage-gated sodium channel Nav1.4 or the calcium channel Cav1.1(1,2). Mutations of the outermost gating charges (R1 and R2) cause hypokalaemic periodic paralysis(1,2) by creating a pathogenic gating pore in the voltage sensor through which cations leak in the resting state(3,4). Mutations of the third gating charge (R3) cause normokalaemic periodic paralysis (5) owing to cation leak in both activated and inactivated states (6) . Here we present high-resolution structures of the model bacterial sodium channel NavAb with the analogous gating-charge mutations(7,8), which have similar functional effects as in the human channels. The R2G and R3G mutations have no effect on the backbone structures of the voltage sensor, but they create an aqueous cavity near the hydrophobic constriction site that controls gating charge movement through the voltage sensor. The R3G mutation extends the extracellular aqueous cleft through the entire length of the activated voltage sensor, creating an aqueous path through the membrane. Conversely, molecular modelling shows that the R2G mutation creates a continuous aqueous path through the membrane only in the resting state. Crystal structures of NavAb(R2G) in complex with guanidinium define a potential drug target site. Molecular dynamics simulations illustrate the mechanism of Na(+) permeation through the mutant gating pore in concert with conformational fluctuations of the gating charge R4. Our results reveal pathogenic mechanisms of periodic paralysis at the atomic level and suggest designs of drugs that may prevent ionic leak and provide symptomatic relief from hypokalaemic and normokalaemic periodic paralysis.
-
The crystal structure of a voltage-gated sodium channel.,Payandeh J, Scheuer T, Zheng N, Catterall WA Nature. 2011 Jul 10;475(7356):353-8. doi: 10.1038/nature10238. PMID:21743477<ref>PMID:21743477</ref>
+
Structural basis for gating pore current in periodic paralysis.,Jiang D, Gamal El-Din TM, Ing C, Lu P, Pomes R, Zheng N, Catterall WA Nature. 2018 May;557(7706):590-594. doi: 10.1038/s41586-018-0120-4. Epub 2018 May, 16. PMID:29769724<ref>PMID:29769724</ref>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
Line 20: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Catterall, W A]]
+
[[Category: Aliarcobacter butzleri RM4018]]
-
[[Category: El-Din, T M.Gamal]]
+
[[Category: Large Structures]]
-
[[Category: Jiang, D]]
+
[[Category: Catterall WA]]
-
[[Category: Zheng, N]]
+
[[Category: Gamal El-Din TM]]
-
[[Category: Metal transport]]
+
[[Category: Jiang D]]
-
[[Category: Mutant]]
+
[[Category: Zheng N]]

Current revision

HypoPP mutant

PDB ID 6c1p

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools