2i6d

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[[Image:2i6d.gif|left|200px]]
 
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{{Structure
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==The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.==
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|PDB= 2i6d |SIZE=350|CAPTION= <scene name='initialview01'>2i6d</scene>, resolution 1.85&Aring;
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<StructureSection load='2i6d' size='340' side='right'caption='[[2i6d]], [[Resolution|resolution]] 1.85&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
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<table><tr><td colspan='2'>[[2i6d]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Porgi Porgi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I6D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I6D FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene></td></tr>
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|GENE= SpoU, PG_0744 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=837 Porphyromonas gingivalis])
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG0566 SpoU], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00588 SpoU_methylase]</span>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SpoU, PG_0744 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=242619 PORGI])</td></tr>
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|RELATEDENTRY=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i6d OCA], [https://pdbe.org/2i6d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i6d RCSB], [https://www.ebi.ac.uk/pdbsum/2i6d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i6d ProSAT], [https://www.topsan.org/Proteins/MCSG/2i6d TOPSAN]</span></td></tr>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i6d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i6d OCA], [http://www.ebi.ac.uk/pdbsum/2i6d PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2i6d RCSB]</span>
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</table>
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}}
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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'''The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.'''
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i6/2i6d_consurf.spt"</scriptWhenChecked>
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==About this Structure==
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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2I6D is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Porphyromonas_gingivalis Porphyromonas gingivalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I6D OCA].
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<text>to colour the structure by Evolutionary Conservation</text>
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[[Category: Porphyromonas gingivalis]]
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</jmolCheckbox>
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[[Category: Single protein]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i6d ConSurf].
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[[Category: Cuff, M E.]]
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<div style="clear:both"></div>
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[[Category: Joachimiak, A.]]
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__TOC__
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[[Category: Li, H.]]
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</StructureSection>
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[[Category: MCSG, Midwest Center for Structural Genomics.]]
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[[Category: Large Structures]]
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[[Category: Moy, S.]]
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[[Category: Porgi]]
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[[Category: Mussar, K E.]]
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[[Category: Cuff, M E]]
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[[Category: knot]]
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[[Category: Joachimiak, A]]
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[[Category: mcsg]]
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[[Category: Li, H]]
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[[Category: midwest center for structural genomic]]
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[[Category: Structural genomic]]
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[[Category: porphyromonas gingivali]]
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[[Category: Moy, S]]
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[[Category: protein structure initiative]]
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[[Category: Mussar, K E]]
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[[Category: psi-2]]
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[[Category: Knot]]
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[[Category: rna methyltransferase]]
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[[Category: Mcsg]]
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[[Category: structural genomic]]
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[[Category: Porphyromonas gingivali]]
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[[Category: stuctural genomic]]
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[[Category: PSI, Protein structure initiative]]
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[[Category: trmh family]]
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[[Category: Rna methyltransferase]]
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[[Category: Stuctural genomic]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:40:19 2008''
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[[Category: Transferase]]
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[[Category: Trmh family]]

Current revision

The structure of a putative RNA methyltransferase of the TrmH family from Porphyromonas gingivalis.

PDB ID 2i6d

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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