This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2i7r

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:04, 12 May 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2i7r.gif|left|200px]]
 
-
{{Structure
+
==conserved domain protein==
-
|PDB= 2i7r |SIZE=350|CAPTION= <scene name='initialview01'>2i7r</scene>, resolution 2.200&Aring;
+
<StructureSection load='2i7r' size='340' side='right'caption='[[2i7r]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>[[2i7r]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I7R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2I7R FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2i7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i7r OCA], [https://pdbe.org/2i7r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2i7r RCSB], [https://www.ebi.ac.uk/pdbsum/2i7r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2i7r ProSAT], [https://www.topsan.org/Proteins/MCSG/2i7r TOPSAN]</span></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam00903 Glyoxalase]</span>
+
</table>
-
|RELATEDENTRY=
+
== Evolutionary Conservation ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2i7r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2i7r OCA], [http://www.ebi.ac.uk/pdbsum/2i7r PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2i7r RCSB]</span>
+
[[Image:Consurf_key_small.gif|200px|right]]
-
}}
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
'''conserved domain protein'''
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/i7/2i7r_consurf.spt"</scriptWhenChecked>
-
 
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
==About this Structure==
+
</jmolCheckbox>
-
2I7R is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2I7R OCA].
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2i7r ConSurf].
-
[[Category: Single protein]]
+
<div style="clear:both"></div>
-
[[Category: Streptococcus pneumoniae]]
+
__TOC__
-
[[Category: Abdullah, J.]]
+
</StructureSection>
-
[[Category: Duke, N E.C.]]
+
[[Category: Large Structures]]
-
[[Category: Joachimiak, A.]]
+
[[Category: Abdullah, J]]
-
[[Category: MCSG, Midwest Center for Structural Genomics.]]
+
[[Category: Duke, N E.C]]
-
[[Category: Zhou, M.]]
+
[[Category: Joachimiak, A]]
-
[[Category: mcsg]]
+
[[Category: Structural genomic]]
-
[[Category: midwest center for structural genomic]]
+
[[Category: Zhou, M]]
-
[[Category: protein structure initiative]]
+
[[Category: Mcsg]]
-
[[Category: psi-2]]
+
[[Category: PSI, Protein structure initiative]]
-
[[Category: structural genomics conserved domain]]
+
[[Category: Unknown function]]
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:40:51 2008''
+

Current revision

conserved domain protein

PDB ID 2i7r

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2i7r"
Personal tools