This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2if6

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:02, 21 February 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2if6.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105==
-
|PDB= 2if6 |SIZE=350|CAPTION= <scene name='initialview01'>2if6</scene>, resolution 1.80&Aring;
+
<StructureSection load='2if6' size='340' side='right'caption='[[2if6]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene>
+
<table><tr><td colspan='2'>[[2if6]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_O157:H7 Escherichia coli O157:H7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IF6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IF6 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
-
|GENE= yiiX, ECs4866, Z5492 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 Escherichia coli])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PRK10030 PRK10030]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2if6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2if6 OCA], [https://pdbe.org/2if6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2if6 RCSB], [https://www.ebi.ac.uk/pdbsum/2if6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2if6 ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2if6 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2if6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2if6 OCA], [http://www.ebi.ac.uk/pdbsum/2if6 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2if6 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q8X778_ECO57 Q8X778_ECO57]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/if/2if6_consurf.spt"</scriptWhenChecked>
-
2IF6 is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IF6 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Escherichia coli]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Single protein]]
+
</jmolCheckbox>
-
[[Category: Almo, S C.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2if6 ConSurf].
-
[[Category: Bain, K T.]]
+
<div style="clear:both"></div>
-
[[Category: Bonanno, J B.]]
+
__TOC__
-
[[Category: Burley, S K.]]
+
</StructureSection>
-
[[Category: Gilmore, J.]]
+
[[Category: Escherichia coli O157:H7]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Large Structures]]
-
[[Category: Ozyurt, S.]]
+
[[Category: Almo SC]]
-
[[Category: Powell, A.]]
+
[[Category: Bain KT]]
-
[[Category: Sauder, J M.]]
+
[[Category: Bonanno JB]]
-
[[Category: Wasserman, S.]]
+
[[Category: Burley SK]]
-
[[Category: hypothetical]]
+
[[Category: Gilmore J]]
-
[[Category: metalloprotein]]
+
[[Category: Ozyurt S]]
-
[[Category: new york structural genomix research consortium]]
+
[[Category: Powell A]]
-
[[Category: nysgxrc]]
+
[[Category: Sauder JM]]
-
[[Category: protein structure initiative]]
+
[[Category: Wasserman S]]
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:43:29 2008''
+

Current revision

Crystal structure of metalloprotein yiiX from Escherichia coli O157:H7, DUF1105

PDB ID 2if6

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2if6"
Personal tools