5xso
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==Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221== | ==Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221== | ||
- | <StructureSection load='5xso' size='340' side='right' caption='[[5xso]], [[Resolution|resolution]] 1.78Å' scene=''> | + | <StructureSection load='5xso' size='340' side='right'caption='[[5xso]], [[Resolution|resolution]] 1.78Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5xso]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XSO OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[5xso]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bradyrhizobium_japonicum Bradyrhizobium japonicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XSO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XSO FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.778Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xso FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xso OCA], [https://pdbe.org/5xso PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xso RCSB], [https://www.ebi.ac.uk/pdbsum/5xso PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xso ProSAT]</span></td></tr> |
</table> | </table> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The symbiotic nitrogen-fixing bacterium Bradyrhizobium japonicum is critical to the agro-industrial production of soybean because it enables the production of high yields of soybeans with little use of nitrogenous fertilizers. The FixL and FixJ two-component system (TCS) of this bacterium ensures that nitrogen fixation is only stimulated under conditions of low oxygen. When it is not bound to oxygen, the histidine kinase FixL undergoes autophosphorylation and transfers phosphate from adenosine triphosphate (ATP) to the response regulator FixJ, which, in turn, stimulates the expression of genes required for nitrogen fixation. We purified full-length B. japonicum FixL and FixJ proteins and defined their structures individually and in complex using small-angle x-ray scattering, crystallographic, and in silico modeling techniques. Comparison of active and inactive forms of FixL suggests that intramolecular signal transduction is driven by local changes in the sensor domain and in the coiled-coil region connecting the sensor and histidine kinase domains. We also found that FixJ exhibits conformational plasticity not only in the monomeric state but also in tetrameric complexes with FixL during phosphotransfer. This structural characterization of a complete TCS contributes both a mechanistic and evolutionary understanding to TCS signal relay, specifically in the context of the control of nitrogen fixation in root nodules. | ||
- | + | ==See Also== | |
- | + | *[[Response regulator 3D structure|Response regulator 3D structure]] | |
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: Antonyuk | + | [[Category: Bradyrhizobium japonicum]] |
- | [[Category: Hasnain | + | [[Category: Large Structures]] |
- | [[Category: Hikima | + | [[Category: Antonyuk SV]] |
- | [[Category: Hisano | + | [[Category: Hasnain SS]] |
- | [[Category: Nakamura | + | [[Category: Hikima T]] |
- | [[Category: Nishizono | + | [[Category: Hisano T]] |
- | [[Category: Saeki | + | [[Category: Nakamura H]] |
- | [[Category: Sawai | + | [[Category: Nishizono Y]] |
- | [[Category: Shiro | + | [[Category: Saeki A]] |
- | [[Category: Wright | + | [[Category: Sawai H]] |
- | [[Category: Yamamoto | + | [[Category: Shiro Y]] |
- | + | [[Category: Wright GSA]] | |
- | + | [[Category: Yamamoto M]] | |
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Current revision
Crystal structure of full-length FixJ from B. japonicum crystallized in space group C2221
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Categories: Bradyrhizobium japonicum | Large Structures | Antonyuk SV | Hasnain SS | Hikima T | Hisano T | Nakamura H | Nishizono Y | Saeki A | Sawai H | Shiro Y | Wright GSA | Yamamoto M