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5yms

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==Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus==
==Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus==
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<StructureSection load='5yms' size='340' side='right' caption='[[5yms]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
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<StructureSection load='5yms' size='340' side='right'caption='[[5yms]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5yms]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Human_group_a_rotavirus Human group a rotavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YMS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5YMS FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5yms]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_rotavirus_A Human rotavirus A]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5YMS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5YMS FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5yms FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yms OCA], [http://pdbe.org/5yms PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5yms RCSB], [http://www.ebi.ac.uk/pdbsum/5yms PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5yms ProSAT]</span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=A2G:N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE'>A2G</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5yms FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5yms OCA], [https://pdbe.org/5yms PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5yms RCSB], [https://www.ebi.ac.uk/pdbsum/5yms PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5yms ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q9Q2P6_9REOV Q9Q2P6_9REOV]] Outer capsid protein VP5*: forms the spike "foot" and "body". Acts as a membrane permeabilization protein that mediates release of viral particles from endosomal compartments into the cytoplasm. In integrin-dependent strains, VP5* targets the integrin heterodimer ITGA2/ITGB1 for cell attachment.[SAAS:SAAS00136874] VP8* forms the head of the spikes. It is the viral hemagglutinin and an important target of neutralizing antibodies. In sialic acid-dependent strains, VP8* binds to host cell sialic acid, most probably a ganglioside, providing the initial contact.[SAAS:SAAS00136880]
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[https://www.uniprot.org/uniprot/Q9Q2P6_9VIRU Q9Q2P6_9VIRU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human group a rotavirus]]
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[[Category: Human rotavirus A]]
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[[Category: Dandi, L]]
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[[Category: Large Structures]]
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[[Category: Duan, Z]]
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[[Category: Dandi L]]
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[[Category: Sun, X]]
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[[Category: Duan Z]]
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[[Category: Mucin core2core 2]]
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[[Category: Sun X]]
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[[Category: Viral protein]]
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[[Category: Vp8*]]
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Structural basis of glycan specificity and identification of a novel glycan binding cavity in human P[19] rotavirus

PDB ID 5yms

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