This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2iml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:19, 31 March 2021) (edit) (undo)
 
(11 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2iml.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate==
-
|PDB= 2iml |SIZE=350|CAPTION= <scene name='initialview01'>2iml</scene>, resolution 1.65&Aring;
+
<StructureSection load='2iml' size='340' side='right'caption='[[2iml]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
+
<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IML FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2iml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iml OCA], [https://pdbe.org/2iml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2iml RCSB], [https://www.ebi.ac.uk/pdbsum/2iml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2iml ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2iml TOPSAN]</span></td></tr>
-
|GENE= AF_1834 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2234 Archaeoglobus fulgidus])
+
</table>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=COG2457 COG2457]</span>
+
== Evolutionary Conservation ==
-
|RELATEDENTRY=
+
[[Image:Consurf_key_small.gif|200px|right]]
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2iml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2iml OCA], [http://www.ebi.ac.uk/pdbsum/2iml PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2iml RCSB]</span>
+
Check<jmol>
-
}}
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/im/2iml_consurf.spt"</scriptWhenChecked>
-
'''Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate'''
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
 
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==About this Structure==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2iml ConSurf].
-
2IML is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IML OCA].
+
<div style="clear:both"></div>
-
[[Category: Archaeoglobus fulgidus]]
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
-
[[Category: Adams, J.]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C.]]
+
[[Category: Adams J]]
-
[[Category: Bain, K T.]]
+
[[Category: Almo SC]]
-
[[Category: Bonanno, J B.]]
+
[[Category: Bain KT]]
-
[[Category: Burley, S K.]]
+
[[Category: Bonanno JB]]
-
[[Category: Dickey, M.]]
+
[[Category: Burley SK]]
-
[[Category: NYSGXRC, New York Structural GenomiX Research Consortium.]]
+
[[Category: Dickey M]]
-
[[Category: Ozyurt, S.]]
+
[[Category: Ozyurt S]]
-
[[Category: Sauder, J M.]]
+
[[Category: Sauder JM]]
-
[[Category: Wasserman, S.]]
+
[[Category: Wasserman S]]
-
[[Category: fmn binding]]
+
-
[[Category: new york structural genomix research consortium]]
+
-
[[Category: nysgxrc]]
+
-
[[Category: protein structure initiative]]
+
-
[[Category: psi-2]]
+
-
[[Category: structural genomic]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:46:09 2008''
+

Current revision

Crystal structure of a hypothetical protein from Archaeoglobus fulgidus binding riboflavin 5'-phosphate

PDB ID 2iml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools