This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6d3h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:32, 13 March 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6d3h is ON HOLD until Paper Publication
+
==FT_T dioxygenase with bound dichlorprop==
 +
<StructureSection load='6d3h' size='340' side='right'caption='[[6d3h]], [[Resolution|resolution]] 2.03&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6d3h]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_herbicidovorans Sphingobium herbicidovorans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D3H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6D3H FirstGlance]. <br>
 +
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.03&#8491;</td></tr>
 +
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=FTV:(2R)-2-(2,4-dichlorophenoxy)propanoic+acid'>FTV</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6d3h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d3h OCA], [https://pdbe.org/6d3h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6d3h RCSB], [https://www.ebi.ac.uk/pdbsum/6d3h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6d3h ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/RDPA_SPHHM RDPA_SPHHM] Involved in the degradation of the phenoxypropionate herbicides. Catalyzes the enantiospecific cleavage of the ether bond in the herbicid R-dichlorprop ((R)-2-(2,4-dichlorophenoxy)propionate)(R-2,4-DP) and R-mecoprop ((R)-2-(4-chloro-2-methylphenoxy)propionate)(R-2,4-MCPP). It can also accept (RS)-4-chlorophenoxypropanoate, however it can only accept 2-oxoglutarate as oxygen acceptor.<ref>PMID:16731970</ref> <ref>PMID:16820480</ref> <ref>PMID:11423952</ref>
-
Authors: Rydel, T.J., Halls, C.E.
+
==See Also==
-
 
+
*[[Dioxygenase 3D structures|Dioxygenase 3D structures]]
-
Description: FT_T dioxygenase with bound dichlorprop
+
== References ==
-
[[Category: Unreleased Structures]]
+
<references/>
-
[[Category: Halls, C.E]]
+
__TOC__
-
[[Category: Rydel, T.J]]
+
</StructureSection>
 +
[[Category: Large Structures]]
 +
[[Category: Sphingobium herbicidovorans]]
 +
[[Category: Halls CE]]
 +
[[Category: Rydel TJ]]

Current revision

FT_T dioxygenase with bound dichlorprop

PDB ID 6d3h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools