This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
6dhg
From Proteopedia
(New page: '''Unreleased structure''' The entry 6dhg is ON HOLD Authors: Description: Category: Unreleased Structures) |
|||
| (4 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | + | ==RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution== | |
| + | <StructureSection load='6dhg' size='340' side='right'caption='[[6dhg]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6dhg]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DHG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DHG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BCR:BETA-CAROTENE'>BCR</scene>, <scene name='pdbligand=BCT:BICARBONATE+ION'>BCT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CLA:CHLOROPHYLL+A'>CLA</scene>, <scene name='pdbligand=DGD:DIGALACTOSYL+DIACYL+GLYCEROL+(DGDG)'>DGD</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=FME:N-FORMYLMETHIONINE'>FME</scene>, <scene name='pdbligand=HEC:HEME+C'>HEC</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LHG:1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE'>LHG</scene>, <scene name='pdbligand=LMG:1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE'>LMG</scene>, <scene name='pdbligand=OEX:CA-MN4-O5+CLUSTER'>OEX</scene>, <scene name='pdbligand=PHO:PHEOPHYTIN+A'>PHO</scene>, <scene name='pdbligand=PL9:2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE'>PL9</scene>, <scene name='pdbligand=SQD:1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL'>SQD</scene>, <scene name='pdbligand=UNL:UNKNOWN+LIGAND'>UNL</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dhg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dhg OCA], [https://pdbe.org/6dhg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dhg RCSB], [https://www.ebi.ac.uk/pdbsum/6dhg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dhg ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/PSBO_THEVB PSBO_THEVB] Part of the oxygen-evolving complex associated with photosystem II (PSII). PSII is a light-driven water plastoquinone oxidoreductase, using light energy to abstract electrons from H(2)O, generating a proton gradient subsequently used for ATP formation.<ref>PMID:20558739</ref> <ref>PMID:21367867</ref> <ref>PMID:25006873</ref> | ||
| - | + | ==See Also== | |
| - | + | *[[Photosystem II 3D structures|Photosystem II 3D structures]] | |
| - | + | == References == | |
| - | [[Category: | + | <references/> |
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Thermosynechococcus vestitus BP-1]] | ||
| + | [[Category: Adams PD]] | ||
| + | [[Category: Aller P]] | ||
| + | [[Category: Alonso-Mori R]] | ||
| + | [[Category: Batyuk A]] | ||
| + | [[Category: Bergmann U]] | ||
| + | [[Category: Boutet S]] | ||
| + | [[Category: Brewster AS]] | ||
| + | [[Category: Butryn A]] | ||
| + | [[Category: Carbajo S]] | ||
| + | [[Category: Chatterjee R]] | ||
| + | [[Category: Cheah MH]] | ||
| + | [[Category: Dobbek H]] | ||
| + | [[Category: Douthit L]] | ||
| + | [[Category: Fransson T]] | ||
| + | [[Category: Fuller FD]] | ||
| + | [[Category: Gul S]] | ||
| + | [[Category: Holton JM]] | ||
| + | [[Category: Hussein R]] | ||
| + | [[Category: Ibrahim M]] | ||
| + | [[Category: Kern J]] | ||
| + | [[Category: Koglin JE]] | ||
| + | [[Category: Kroll T]] | ||
| + | [[Category: Lassalle L]] | ||
| + | [[Category: Liang M]] | ||
| + | [[Category: Messinger J]] | ||
| + | [[Category: Moriarty NW]] | ||
| + | [[Category: Orville AM]] | ||
| + | [[Category: Pastor E]] | ||
| + | [[Category: Sauter NK]] | ||
| + | [[Category: Seufert I]] | ||
| + | [[Category: Shevela D]] | ||
| + | [[Category: Sierra RG]] | ||
| + | [[Category: Sokaras D]] | ||
| + | [[Category: Weninger C]] | ||
| + | [[Category: Wersig J]] | ||
| + | [[Category: Yachandra VK]] | ||
| + | [[Category: Yano J]] | ||
| + | [[Category: Young ID]] | ||
| + | [[Category: Zhang M]] | ||
| + | [[Category: Zouni A]] | ||
| + | [[Category: De Lichtenberg C]] | ||
Current revision
RT XFEL structure of Photosystem II 150 microseconds after the second illumination at 2.5 Angstrom resolution
| |||||||||||
Categories: Large Structures | Thermosynechococcus vestitus BP-1 | Adams PD | Aller P | Alonso-Mori R | Batyuk A | Bergmann U | Boutet S | Brewster AS | Butryn A | Carbajo S | Chatterjee R | Cheah MH | Dobbek H | Douthit L | Fransson T | Fuller FD | Gul S | Holton JM | Hussein R | Ibrahim M | Kern J | Koglin JE | Kroll T | Lassalle L | Liang M | Messinger J | Moriarty NW | Orville AM | Pastor E | Sauter NK | Seufert I | Shevela D | Sierra RG | Sokaras D | Weninger C | Wersig J | Yachandra VK | Yano J | Young ID | Zhang M | Zouni A | De Lichtenberg C
