6dhr
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6dhr is ON HOLD Authors: Harvey, P.J., Craik, D.J. Description: NMR Solution structure of Rivi3 Category: Unreleased Structures [[Category: Cra...) |
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- | '''Unreleased structure''' | ||
- | + | ==NMR Solution structure of Rivi3== | |
+ | <StructureSection load='6dhr' size='340' side='right'caption='[[6dhr]]' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[6dhr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Rinorea_virgata Rinorea virgata]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DHR FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 20 models</td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dhr OCA], [https://pdbe.org/6dhr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dhr RCSB], [https://www.ebi.ac.uk/pdbsum/6dhr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dhr ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/A0A4V8GZR4_9ROSI A0A4V8GZR4_9ROSI] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Cyclotides are macrocyclic cystine-knotted peptides most commonly found in the Violaceae plant family. Although Rinorea is the second-largest genera within the Violaceae family, few studies have examined whether or not they contain cyclotides. To further our understanding of cyclotide diversity and evolution, we examined the cyclotide content of two Rinorea species found in Southeast Asia: R. virgata and R. bengalensis. Seven cyclotides were isolated from R. virgata (named Rivi1-7), and a known cyclotide (cT10) was found in R. bengalensis. Loops 2, 5, and 6 of Rivi1-4 contained sequences not previously seen in corresponding loops of known cyclotides, thereby expanding our understanding of the diversity of cyclotides. In addition, the sequence of loop 2 of Rivi3 and Rivi4 were identical to some related noncyclic "acyclotides" from the Poaceae plant family. As only acyclotides, but not cyclotides, have been reported in monocotyledons thus far, our findings support an evolutionary link between monocotyledon-derived ancestral cyclotide precursors and dicotyledon-derived cyclotides. Furthermore, Rivi2 and Rivi3 had comparable cytotoxic activities to the most cytotoxic cyclotide known to date: cycloviolacin O2 from Viola odorata; yet, unlike cycloviolacin O2, they did not show hemolytic activity. Therefore, these cyclotides represent novel scaffolds for use in future anticancer drug design. | ||
- | + | Discovery and Characterization of Cyclotides from Rinorea Species.,Niyomploy P, Chan LY, Harvey PJ, Poth AG, Colgrave ML, Craik DJ J Nat Prod. 2018 Nov 26;81(11):2512-2520. doi: 10.1021/acs.jnatprod.8b00572. Epub, 2018 Nov 2. PMID:30387611<ref>PMID:30387611</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: Craik | + | <div class="pdbe-citations 6dhr" style="background-color:#fffaf0;"></div> |
- | [[Category: Harvey | + | == References == |
+ | <references/> | ||
+ | __TOC__ | ||
+ | </StructureSection> | ||
+ | [[Category: Large Structures]] | ||
+ | [[Category: Rinorea virgata]] | ||
+ | [[Category: Craik DJ]] | ||
+ | [[Category: Harvey PJ]] |
Current revision
NMR Solution structure of Rivi3
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