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6dig
From Proteopedia
(Difference between revisions)
(New page: '''Unreleased structure''' The entry 6dig is ON HOLD Authors: Birtley, J.R., Stern, L.J., Mellins, E.D., Jiang, W. Description: Crystal structure of DQ6 in complex with a neuro-peptide...) |
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| - | '''Unreleased structure''' | ||
| - | + | ==Crystal structure of DQA1*01:02/DQB1*06:02 in complex with a hypocretin peptide== | |
| + | <StructureSection load='6dig' size='340' side='right'caption='[[6dig]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[6dig]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DIG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DIG FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dig FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dig OCA], [https://pdbe.org/6dig PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dig RCSB], [https://www.ebi.ac.uk/pdbsum/6dig PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dig ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q30066_HUMAN Q30066_HUMAN] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Individuals with narcolepsy suffer from abnormal sleep patterns due to loss of neurons that uniquely supply hypocretin (HCRT). Previous studies found associations of narcolepsy with the human leukocyte antigen (HLA)-DQ6 allele and T-cell receptor alpha (TRA) J24 gene segment and also suggested that in vitro-stimulated T cells can target HCRT. Here, we present evidence of in vivo expansion of DQ6-HCRT tetramer(+)/TRAJ24(+)/CD4(+) T cells in DQ6(+) individuals with and without narcolepsy. We identify related TRAJ24(+) TCRalphabeta clonotypes encoded by identical alpha/beta gene regions from two patients and two controls. TRAJ24-G allele(+) clonotypes only expand in the two patients, whereas a TRAJ24-C allele(+) clonotype expands in a control. A representative tetramer(+)/G-allele(+) TCR shows signaling reactivity to the epitope HCRT87-97. Clonally expanded G-allele(+) T cells exhibit an unconventional effector phenotype. Our analysis of in vivo expansion of HCRT-reactive TRAJ24(+) cells opens an avenue for further investigation of the autoimmune contribution to narcolepsy development. | ||
| - | + | In vivo clonal expansion and phenotypes of hypocretin-specific CD4(+) T cells in narcolepsy patients and controls.,Jiang W, Birtley JR, Hung SC, Wang W, Chiou SH, Macaubas C, Kornum B, Tian L, Huang H, Adler L, Weaver G, Lu L, Ilstad-Minnihan A, Somasundaram S, Ayyangar S, Davis MM, Stern LJ, Mellins ED Nat Commun. 2019 Nov 20;10(1):5247. doi: 10.1038/s41467-019-13234-x. PMID:31748512<ref>PMID:31748512</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 6dig" style="background-color:#fffaf0;"></div> |
| - | [[Category: Jiang | + | |
| - | [[Category: | + | ==See Also== |
| - | [[Category: Stern | + | *[[MHC 3D structures|MHC 3D structures]] |
| + | *[[MHC II 3D structures|MHC II 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
| + | __TOC__ | ||
| + | </StructureSection> | ||
| + | [[Category: Homo sapiens]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: Birtley JR]] | ||
| + | [[Category: Jiang W]] | ||
| + | [[Category: Mellins ED]] | ||
| + | [[Category: Stern LJ]] | ||
Current revision
Crystal structure of DQA1*01:02/DQB1*06:02 in complex with a hypocretin peptide
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