2isa

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[[Image:2isa.gif|left|200px]]
 
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{{Structure
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==Crystal Structure of Vibrio salmonicida catalase==
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|PDB= 2isa |SIZE=350|CAPTION= <scene name='initialview01'>2isa</scene>, resolution 1.97&Aring;
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<StructureSection load='2isa' size='340' side='right'caption='[[2isa]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OMT:S-DIOXYMETHIONINE'>OMT</scene>
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<table><tr><td colspan='2'>[[2isa]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Aliivibrio_salmonicida_LFI1238 Aliivibrio salmonicida LFI1238]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ISA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ISA FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/Catalase Catalase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.11.1.6 1.11.1.6] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OMT:S-DIOXYMETHIONINE'>OMT</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2isa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2isa OCA], [https://pdbe.org/2isa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2isa RCSB], [https://www.ebi.ac.uk/pdbsum/2isa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2isa ProSAT]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2isa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2isa OCA], [http://www.ebi.ac.uk/pdbsum/2isa PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2isa RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/Q3LSM1_ALISL Q3LSM1_ALISL]
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== Evolutionary Conservation ==
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'''Crystal Structure of Vibrio salmonicida catalase'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==Overview==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/is/2isa_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2isa ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
The cold-adapted catalase from the fish-pathogenic bacterium Vibrio salmonicida (VSC) has recently been characterized and shown to be two times more catalytically efficient compared with catalase from the mesophilic human pathogen Proteus mirabilis [PMC; Lorentzen et al. (2006), Extremophiles, 10, 427-440]. VSC is also less temperature-stable, with a half-life of 5 min at 333 K compared with 50 min for PMC. This was the background for solving the crystal structure of the cold-adapted VSC to 1.96 A and performing an extensive structural comparison of VSC and PMC. The comparison revealed that the entrance (the major channel) leading to the catalytically essential haem group, is locally more flexible and slightly wider in VSC. This might explain the enhanced catalytic efficiency of the nearly diffusion-controlled degradation of hydrogen peroxide into water and molecular oxygen in VSC. The reduced thermal stability of the cold-adapted VSC may be explained by a reduced number of ion-pair networks. The four C-terminal alpha-helices are displaced in the structures, probably owing to missing ionic interactions in VSC compared with PMC, and this is postulated as an initiation site for unfolding the cold-adapted enzyme. VSC is the first crystal structure reported of a cold-adapted monofunctional haem-containing catalase.
The cold-adapted catalase from the fish-pathogenic bacterium Vibrio salmonicida (VSC) has recently been characterized and shown to be two times more catalytically efficient compared with catalase from the mesophilic human pathogen Proteus mirabilis [PMC; Lorentzen et al. (2006), Extremophiles, 10, 427-440]. VSC is also less temperature-stable, with a half-life of 5 min at 333 K compared with 50 min for PMC. This was the background for solving the crystal structure of the cold-adapted VSC to 1.96 A and performing an extensive structural comparison of VSC and PMC. The comparison revealed that the entrance (the major channel) leading to the catalytically essential haem group, is locally more flexible and slightly wider in VSC. This might explain the enhanced catalytic efficiency of the nearly diffusion-controlled degradation of hydrogen peroxide into water and molecular oxygen in VSC. The reduced thermal stability of the cold-adapted VSC may be explained by a reduced number of ion-pair networks. The four C-terminal alpha-helices are displaced in the structures, probably owing to missing ionic interactions in VSC compared with PMC, and this is postulated as an initiation site for unfolding the cold-adapted enzyme. VSC is the first crystal structure reported of a cold-adapted monofunctional haem-containing catalase.
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==About this Structure==
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The first structure of a cold-active catalase from Vibrio salmonicida at 1.96 A reveals structural aspects of cold adaptation.,Riise EK, Lorentzen MS, Helland R, Smalas AO, Leiros HK, Willassen NP Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):135-48. Epub 2007, Jan 16. PMID:17242507<ref>PMID:17242507</ref>
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2ISA is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Aliivibrio_salmonicida Aliivibrio salmonicida]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ISA OCA].
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==Reference==
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The first structure of a cold-active catalase from Vibrio salmonicida at 1.96 A reveals structural aspects of cold adaptation., Riise EK, Lorentzen MS, Helland R, Smalas AO, Leiros HK, Willassen NP, Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):135-48. Epub 2007, Jan 16. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17242507 17242507]
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</div>
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[[Category: Aliivibrio salmonicida]]
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<div class="pdbe-citations 2isa" style="background-color:#fffaf0;"></div>
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[[Category: Catalase]]
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[[Category: Single protein]]
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[[Category: Helland, R.]]
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[[Category: Leiros, H K.S.]]
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[[Category: Lorentzen, M S.]]
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[[Category: Riise, E K.]]
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[[Category: Smalas, A O.]]
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[[Category: Willassen, N P.]]
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[[Category: 3d-structure]]
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[[Category: heme]]
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[[Category: hydrogen peroxide]]
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[[Category: iron]]
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[[Category: oxidoreductase]]
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[[Category: peroxidase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:47:51 2008''
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==See Also==
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*[[Catalase 3D structures|Catalase 3D structures]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Aliivibrio salmonicida LFI1238]]
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[[Category: Large Structures]]
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[[Category: Helland R]]
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[[Category: Leiros HKS]]
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[[Category: Lorentzen MS]]
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[[Category: Riise EK]]
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[[Category: Smalas AO]]
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[[Category: Willassen NP]]

Current revision

Crystal Structure of Vibrio salmonicida catalase

PDB ID 2isa

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