6gnz

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'''Unreleased structure'''
 
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The entry 6gnz is ON HOLD
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==Plantaricin S-a in 100 mM DPC micelles. This is the alpha part of the bacteriocin plantaricin S.==
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<StructureSection load='6gnz' size='340' side='right'caption='[[6gnz]]' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6gnz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactiplantibacillus_plantarum Lactiplantibacillus plantarum]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6GNZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6GNZ FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6gnz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6gnz OCA], [https://pdbe.org/6gnz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6gnz RCSB], [https://www.ebi.ac.uk/pdbsum/6gnz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6gnz ProSAT]</span></td></tr>
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</table>
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== Function ==
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[https://www.uniprot.org/uniprot/O32831_LACPN O32831_LACPN]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The structure of the individual peptides of the two-peptide bacteriocin plantaricin S, an antimicrobial peptide produced by a Lactobacillus plantarum strain, has been determined in DPC micelles. The two peptides of plantaricin S, Pls-alpha and Pls-beta, form an alpha-helix from and including residue 8 to 24 with a less structured region around residue 16-19 and an amphiphilic alpha-helix from and including residue 7 to 23, respectively. Activity assays on single amino acid-substituted GxxxG and GxxxG-like motifs show that substituting the Ser and Gly residues in the G9xxxG13 motif in Pls-alpha and the S17xxxG21 motif in Pls-beta reduced or drastically reduced the antimicrobial activity. The two-peptide bacteriocin muricidin contains GxxxG-like motifs at similar positions and displays 40-50% amino acid identity with plantaricin S. Activity assays of combinations of the peptides that constitute the bacteriocins plantaricin S and muricidin show that some combinations are highly active. Furthermore, sequence alignments show that the motifs important for plantaricin S activity align with identical motifs in muricidin. Based on sequence comparison and activity assays, a membrane-inserted model of plantaricin S in which the two peptides are oriented antiparallel relative to each other and where the GxxxG and GxxxG-like motifs important for activity come close in space, is proposed.
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Authors: Ekblad, B., Kristiansen, P.E.
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NMR structures and mutational analysis of the two peptides constituting the bacteriocin plantaricin S.,Ekblad B, Kristiansen PE Sci Rep. 2019 Feb 20;9(1):2333. doi: 10.1038/s41598-019-38518-6. PMID:30787405<ref>PMID:30787405</ref>
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Description: Plantaricin S-b in 100 mM DPC micelles. This is the alfa part of the bacteriocin plantaricin S.
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Ekblad, B]]
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<div class="pdbe-citations 6gnz" style="background-color:#fffaf0;"></div>
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[[Category: Kristiansen, P.E]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Lactiplantibacillus plantarum]]
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[[Category: Large Structures]]
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[[Category: Ekblad B]]
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[[Category: Kristiansen PE]]

Current revision

Plantaricin S-a in 100 mM DPC micelles. This is the alpha part of the bacteriocin plantaricin S.

PDB ID 6gnz

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