5xmj
From Proteopedia
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==Crystal structure of quinol:fumarate reductase from Desulfovibrio gigas== | ==Crystal structure of quinol:fumarate reductase from Desulfovibrio gigas== | ||
- | <StructureSection load='5xmj' size='340' side='right' caption='[[5xmj]], [[Resolution|resolution]] 3.60Å' scene=''> | + | <StructureSection load='5xmj' size='340' side='right'caption='[[5xmj]], [[Resolution|resolution]] 3.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[5xmj]] is a 12 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5xmj]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas] and [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas_DSM_1382_=_ATCC_19364 Megalodesulfovibrio gigas DSM 1382 = ATCC 19364]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XMJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XMJ FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.6Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=FES:FE2/S2+(INORGANIC)+CLUSTER'>FES</scene>, <scene name='pdbligand=FUM:FUMARIC+ACID'>FUM</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=MQ7:MENAQUINONE-7'>MQ7</scene></td></tr> | |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xmj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xmj OCA], [https://pdbe.org/5xmj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xmj RCSB], [https://www.ebi.ac.uk/pdbsum/5xmj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xmj ProSAT]</span></td></tr> |
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/T2GB49_MEGG1 T2GB49_MEGG1] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | The membrane-embedded quinol:fumarate reductase (QFR) in anaerobic bacteria catalyzes the reduction of fumarate to succinate by quinol in the anaerobic respiratory chain. The electron/proton-transfer pathways in QFRs remain controversial. Here we report the crystal structure of QFR from the anaerobic sulphate-reducing bacterium Desulfovibrio gigas (D. gigas) at 3.6 A resolution. The structure of the D. gigas QFR is a homo-dimer, each protomer comprising two hydrophilic subunits, A and B, and one transmembrane subunit C, together with six redox cofactors including two b-hemes. One menaquinone molecule is bound near heme bL in the hydrophobic subunit C. This location of the menaquinone-binding site differs from the menaquinol-binding cavity proposed previously for QFR from Wolinella succinogenes. The observed bound menaquinone might serve as an additional redox cofactor to mediate the proton-coupled electron transport across the membrane. Armed with these structural insights, we propose electron/proton-transfer pathways in the quinol reduction of fumarate to succinate in the D. gigas QFR. | ||
+ | |||
+ | Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas.,Guan HH, Hsieh YC, Lin PJ, Huang YC, Yoshimura M, Chen LY, Chen SK, Chuankhayan P, Lin CC, Chen NC, Nakagawa A, Chan SI, Chen CJ Sci Rep. 2018 Oct 8;8(1):14935. doi: 10.1038/s41598-018-33193-5. PMID:30297797<ref>PMID:30297797</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 5xmj" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Succinate dehydrogenase 3D structures|Succinate dehydrogenase 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Megalodesulfovibrio gigas]] |
- | [[Category: Chen | + | [[Category: Megalodesulfovibrio gigas DSM 1382 = ATCC 19364]] |
- | [[Category: Guan | + | [[Category: Chen CJ]] |
- | [[Category: Hsieh | + | [[Category: Guan HH]] |
- | [[Category: Lin | + | [[Category: Hsieh YC]] |
- | + | [[Category: Lin PR]] | |
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Current revision
Crystal structure of quinol:fumarate reductase from Desulfovibrio gigas
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