2egv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:49, 13 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of rRNA methyltransferase with SAM ligand==
==Crystal structure of rRNA methyltransferase with SAM ligand==
-
<StructureSection load='2egv' size='340' side='right' caption='[[2egv]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
+
<StructureSection load='2egv' size='340' side='right'caption='[[2egv]], [[Resolution|resolution]] 1.45&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2egv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"aquifex_aeolicus"_huber_and_stetter_2001 "aquifex aeolicus" huber and stetter 2001]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EGV OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2EGV FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2egv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EGV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EGV FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.45&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2egw|2egw]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SAM:S-ADENOSYLMETHIONINE'>SAM</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RsmE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=63363 "Aquifex aeolicus" Huber and Stetter 2001])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2egv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2egv OCA], [https://pdbe.org/2egv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2egv RCSB], [https://www.ebi.ac.uk/pdbsum/2egv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2egv ProSAT], [https://www.topsan.org/Proteins/RSGI/2egv TOPSAN]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2egv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2egv OCA], [http://pdbe.org/2egv PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2egv RCSB], [http://www.ebi.ac.uk/pdbsum/2egv PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2egv ProSAT], [http://www.topsan.org/Proteins/RSGI/2egv TOPSAN]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RSME_AQUAE RSME_AQUAE]] Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity).
+
[https://www.uniprot.org/uniprot/RSME_AQUAE RSME_AQUAE] Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 23: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Aquifex aeolicus huber and stetter 2001]]
+
[[Category: Aquifex aeolicus]]
-
[[Category: Bessho, Y]]
+
[[Category: Large Structures]]
-
[[Category: Dong, X]]
+
[[Category: Bessho Y]]
-
[[Category: Structural genomic]]
+
[[Category: Dong X]]
-
[[Category: Shirouzu, M]]
+
[[Category: Shirouzu M]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: M3u]]
+
-
[[Category: Methyltransferase]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Pua domain]]
+
-
[[Category: Rna methyltransferase]]
+
-
[[Category: Rrna modification]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Rsme]]
+
-
[[Category: Sam]]
+

Current revision

Crystal structure of rRNA methyltransferase with SAM ligand

PDB ID 2egv

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools