This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2enm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (18:53, 29 May 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Solution structure of the SH3 domain from mouse sorting nexin-9==
==Solution structure of the SH3 domain from mouse sorting nexin-9==
-
<StructureSection load='2enm' size='340' side='right' caption='[[2enm]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2enm' size='340' side='right'caption='[[2enm]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2enm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ENM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ENM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2enm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ENM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ENM FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Snx9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2enm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2enm OCA], [http://pdbe.org/2enm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2enm RCSB], [http://www.ebi.ac.uk/pdbsum/2enm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2enm ProSAT], [http://www.topsan.org/Proteins/RSGI/2enm TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2enm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2enm OCA], [https://pdbe.org/2enm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2enm RCSB], [https://www.ebi.ac.uk/pdbsum/2enm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2enm ProSAT], [https://www.topsan.org/Proteins/RSGI/2enm TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/SNX9_MOUSE SNX9_MOUSE]] May be involved in several stages of intracellular trafficking. Plays a role in endocytosis via clathrin-coated pits, but also clathrin-independent, actin-dependent fluid-phase endocytosis. Plays a role in macropinocytosis. Promotes internalization of TNFR. Promotes degradation of EGFR after EGF signaling. Stimulates the GTPase activity of DNM1. Promotes DNM1 oligomerization. Promotes activation of the Arp2/3 complex by WASL, and thereby plays a role in the reorganization of the F-actin cytoskeleton. Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate and promotes membrane tubulation. Has lower affinity for membranes enriched in phosphatidylinositol 3-phosphate (By similarity).
+
[https://www.uniprot.org/uniprot/SNX9_MOUSE SNX9_MOUSE] May be involved in several stages of intracellular trafficking. Plays a role in endocytosis via clathrin-coated pits, but also clathrin-independent, actin-dependent fluid-phase endocytosis. Plays a role in macropinocytosis. Promotes internalization of TNFR. Promotes degradation of EGFR after EGF signaling. Stimulates the GTPase activity of DNM1. Promotes DNM1 oligomerization. Promotes activation of the Arp2/3 complex by WASL, and thereby plays a role in the reorganization of the F-actin cytoskeleton. Binds to membranes enriched in phosphatidylinositol 4,5-bisphosphate and promotes membrane tubulation. Has lower affinity for membranes enriched in phosphatidylinositol 3-phosphate (By similarity).
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 21: Line 21:
==See Also==
==See Also==
-
*[[Sorting nexin|Sorting nexin]]
+
*[[Sorting nexin 3D structures|Sorting nexin 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Hayashi, F]]
+
[[Category: Mus musculus]]
-
[[Category: Kurosaki, C]]
+
[[Category: Hayashi F]]
-
[[Category: Structural genomic]]
+
[[Category: Kurosaki C]]
-
[[Category: Wakabayashi, M]]
+
[[Category: Wakabayashi M]]
-
[[Category: Yokoyama, S]]
+
[[Category: Yokoyama S]]
-
[[Category: Yoshida, M]]
+
[[Category: Yoshida M]]
-
[[Category: Endocytosis]]
+
-
[[Category: National project on protein structural and functional analyse]]
+
-
[[Category: Nppsfa]]
+
-
[[Category: Protein transport]]
+
-
[[Category: Rsgi]]
+
-
[[Category: Sh3-like barrel]]
+

Current revision

Solution structure of the SH3 domain from mouse sorting nexin-9

PDB ID 2enm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools