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| | ==Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1== | | ==Thermodynamic and Structural Analysis of Thermolabile RNase HI from Shewanella oneidensis MR-1== |
| - | <StructureSection load='2e4l' size='340' side='right' caption='[[2e4l]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='2e4l' size='340' side='right'caption='[[2e4l]], [[Resolution|resolution]] 2.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2e4l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Sheon Sheon]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2E4L FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2e4l]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2E4L OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2E4L FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rnhA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=211586 SHEON])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribonuclease_H Ribonuclease H], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.26.4 3.1.26.4] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2e4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4l OCA], [https://pdbe.org/2e4l PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2e4l RCSB], [https://www.ebi.ac.uk/pdbsum/2e4l PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4l ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2e4l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2e4l OCA], [http://pdbe.org/2e4l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2e4l RCSB], [http://www.ebi.ac.uk/pdbsum/2e4l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2e4l ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/RNH_SHEON RNH_SHEON]] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids (By similarity). | + | [https://www.uniprot.org/uniprot/RNH_SHEON RNH_SHEON] Endonuclease that specifically degrades the RNA of RNA-DNA hybrids (By similarity). |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | ==See Also== | | ==See Also== |
| - | *[[Ribonuclease|Ribonuclease]] | + | *[[Ribonuclease 3D structures|Ribonuclease 3D structures]] |
| - | *[[Temp|Temp]]
| + | |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Ribonuclease H]] | + | [[Category: Large Structures]] |
| - | [[Category: Sheon]] | + | [[Category: Shewanella oneidensis MR-1]] |
| - | [[Category: Chon, H]] | + | [[Category: Chon H]] |
| - | [[Category: Kanaya, S]] | + | [[Category: Kanaya S]] |
| - | [[Category: Koga, Y]] | + | [[Category: Koga Y]] |
| - | [[Category: Matsumura, H]] | + | [[Category: Matsumura H]] |
| - | [[Category: Tadokoro, T]] | + | [[Category: Tadokoro T]] |
| - | [[Category: Takano, K]] | + | [[Category: Takano K]] |
| - | [[Category: You, D J]] | + | [[Category: You DJ]] |
| - | [[Category: Endoribonuclease]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Rnase hi]]
| + | |
| - | [[Category: Shewanella oneidensis mr-1]]
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| Structural highlights
Function
RNH_SHEON Endonuclease that specifically degrades the RNA of RNA-DNA hybrids (By similarity).
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Ribonuclease (RNase) HI from the psychrotrophic bacterium Shewanella oneidensis MR-1 was overproduced in Escherichia coli, purified, and structurally and biochemically characterized. The amino acid sequence of MR-1 RNase HI is 67% identical to that of E. coli RNase HI. The crystal structure of MR-1 RNase HI determined at 2.0 A resolution was highly similar to that of E. coli RNase HI, except that the number of intramolecular ion pairs and the fraction of polar surface area of MR-1 RNase HI were reduced compared to those of E. coli RNase HI. The enzymatic properties of MR-1 RNase HI were similar to those of E. coli RNase HI. However, MR-1 RNase HI was much less stable than E. coli RNase HI. The stability of MR-1 RNase HI against heat inactivation was lower than that of E. coli RNase HI by 19 degrees C. The conformational stability of MR-1 RNase HI was thermodynamically analyzed by monitoring the CD values at 220 nm. MR-1 RNase HI was less stable than E. coli RNase HI by 22.4 degrees C in Tm and 12.5 kJ/mol in DeltaG(H2O). The thermodynamic stability curve of MR-1 RNase HI was characterized by a downward shift and increased curvature, which results in an increased DeltaCp value, compared to that of E. coli RNase HI. Site-directed mutagenesis studies suggest that the difference in the number of intramolecular ion pairs partly accounts for the difference in stability between MR-1 and E. coli RNases HI.
Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI.,Tadokoro T, You DJ, Abe Y, Chon H, Matsumura H, Koga Y, Takano K, Kanaya S Biochemistry. 2007 Jun 26;46(25):7460-8. Epub 2007 May 31. PMID:17536836[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Tadokoro T, You DJ, Abe Y, Chon H, Matsumura H, Koga Y, Takano K, Kanaya S. Structural, thermodynamic, and mutational analyses of a psychrotrophic RNase HI. Biochemistry. 2007 Jun 26;46(25):7460-8. Epub 2007 May 31. PMID:17536836 doi:10.1021/bi7001423
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