5oc0

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==Structure of E. coli superoxide oxidase==
==Structure of E. coli superoxide oxidase==
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<StructureSection load='5oc0' size='340' side='right' caption='[[5oc0]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
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<StructureSection load='5oc0' size='340' side='right'caption='[[5oc0]], [[Resolution|resolution]] 1.97&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5oc0]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OC0 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OC0 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5oc0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OC0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OC0 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=37X:OCTYL+GLUCOSE+NEOPENTYL+GLYCOL'>37X</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.97&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=37X:OCTYL+GLUCOSE+NEOPENTYL+GLYCOL'>37X</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oc0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oc0 OCA], [http://pdbe.org/5oc0 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oc0 RCSB], [http://www.ebi.ac.uk/pdbsum/5oc0 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oc0 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oc0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oc0 OCA], [https://pdbe.org/5oc0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oc0 RCSB], [https://www.ebi.ac.uk/pdbsum/5oc0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oc0 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/C561_ECOLI C561_ECOLI]] B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm.
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[https://www.uniprot.org/uniprot/C561_ECOLI C561_ECOLI] B-type di-heme cytochrome with a major alpha-absorption peak at 561 nm and a minor peak at 555 nm.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Superoxide is a reactive oxygen species produced during aerobic metabolism in mitochondria and prokaryotes. It causes damage to lipids, proteins and DNA and is implicated in cancer, cardiovascular disease, neurodegenerative disorders and aging. As protection, cells express soluble superoxide dismutases, disproportionating superoxide to oxygen and hydrogen peroxide. Here, we describe a membrane-bound enzyme that directly oxidizes superoxide and funnels the sequestered electrons to ubiquinone in a diffusion-limited reaction. Experiments in proteoliposomes and inverted membranes show that the protein is capable of efficiently quenching superoxide generated at the membrane in vitro. The 2.0 A crystal structure shows an integral membrane di-heme cytochrome b poised for electron transfer from the P-side and proton uptake from the N-side. This suggests that the reaction is electrogenic and contributes to the membrane potential while also conserving energy by reducing the quinone pool. Based on this enzymatic activity, we propose that the enzyme family be denoted superoxide oxidase (SOO).
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Scavenging of superoxide by a membrane-bound superoxide oxidase.,Lundgren CAK, Sjostrand D, Biner O, Bennett M, Rudling A, Johansson AL, Brzezinski P, Carlsson J, von Ballmoos C, Hogbom M Nat Chem Biol. 2018 Jun 18. pii: 10.1038/s41589-018-0072-x. doi:, 10.1038/s41589-018-0072-x. PMID:29915379<ref>PMID:29915379</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5oc0" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ballmoos, C von]]
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[[Category: Escherichia coli K-12]]
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[[Category: Bennett, M]]
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[[Category: Large Structures]]
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[[Category: Biner, O]]
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[[Category: Bennett M]]
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[[Category: Hogbom, M]]
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[[Category: Biner O]]
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[[Category: Lundgren, C A.K]]
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[[Category: Hogbom M]]
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[[Category: Sjostrand, D]]
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[[Category: Lundgren CAK]]
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[[Category: Electron transport]]
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[[Category: Sjostrand D]]
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[[Category: Heme]]
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[[Category: Von Ballmoos C]]
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[[Category: Membrane protein]]
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[[Category: Oxidoreductase]]
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[[Category: Quinone]]
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[[Category: Respiratory chain]]
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[[Category: Ro]]
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[[Category: Superoxide]]
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[[Category: Ubiquinone]]
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Current revision

Structure of E. coli superoxide oxidase

PDB ID 5oc0

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