This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5ws3
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Crystal structures of human orexin 2 receptor bound to the selective antagonist EMPA determined by serial femtosecond crystallography at SACLA== | ==Crystal structures of human orexin 2 receptor bound to the selective antagonist EMPA determined by serial femtosecond crystallography at SACLA== | ||
| - | <StructureSection load='5ws3' size='340' side='right' caption='[[5ws3]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='5ws3' size='340' side='right'caption='[[5ws3]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[5ws3]] is a 1 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[5ws3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Pyrococcus_abyssi_GE5 Pyrococcus abyssi GE5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5WS3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5WS3 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=7MA:N-ethyl-2-[(6-methoxypyridin-3-yl)-(2-methylphenyl)sulfonyl-amino]-N-(pyridin-3-ylmethyl)ethanamide'>7MA</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=7MA:N-ethyl-2-[(6-methoxypyridin-3-yl)-(2-methylphenyl)sulfonyl-amino]-N-(pyridin-3-ylmethyl)ethanamide'>7MA</scene>, <scene name='pdbligand=OLA:OLEIC+ACID'>OLA</scene></td></tr> | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ws3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ws3 OCA], [https://pdbe.org/5ws3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ws3 RCSB], [https://www.ebi.ac.uk/pdbsum/5ws3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ws3 ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [[ | + | [https://www.uniprot.org/uniprot/Q9V2J8_PYRAB Q9V2J8_PYRAB] [https://www.uniprot.org/uniprot/OX2R_HUMAN OX2R_HUMAN] Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides. |
<div style="background-color:#fffaf0;"> | <div style="background-color:#fffaf0;"> | ||
== Publication Abstract from PubMed == | == Publication Abstract from PubMed == | ||
| Line 26: | Line 26: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Homo sapiens]] |
| - | [[Category: Fujiwara | + | [[Category: Large Structures]] |
| - | [[Category: Hatsui | + | [[Category: Pyrococcus abyssi GE5]] |
| - | [[Category: Hirokawa | + | [[Category: Fujiwara T]] |
| - | [[Category: Horita | + | [[Category: Hatsui T]] |
| - | [[Category: Im | + | [[Category: Hirokawa T]] |
| - | [[Category: Iwata | + | [[Category: Horita S]] |
| - | [[Category: Joti | + | [[Category: Im D]] |
| - | [[Category: Kameshima | + | [[Category: Iwata S]] |
| - | [[Category: Kimura | + | [[Category: Joti Y]] |
| - | [[Category: Kobayashi | + | [[Category: Kameshima T]] |
| - | [[Category: Nakane | + | [[Category: Kimura K]] |
| - | [[Category: Nango | + | [[Category: Kobayashi T]] |
| - | [[Category: Rosenbaum | + | [[Category: Nakane T]] |
| - | [[Category: Sasanuma | + | [[Category: Nango E]] |
| - | [[Category: Shimamoto | + | [[Category: Rosenbaum DM]] |
| - | [[Category: Shimamura | + | [[Category: Sasanuma M]] |
| - | [[Category: Suno | + | [[Category: Shimamoto K]] |
| - | [[Category: Tono | + | [[Category: Shimamura T]] |
| - | [[Category: Tsujimoto | + | [[Category: Suno R]] |
| - | [[Category: Wang | + | [[Category: Tono K]] |
| - | [[Category: Yabashi | + | [[Category: Tsujimoto H]] |
| - | [[Category: Yamamoto | + | [[Category: Wang J]] |
| - | [[Category: Yamanaka | + | [[Category: Yabashi M]] |
| - | [[Category: Yamashita | + | [[Category: Yamamoto M]] |
| - | + | [[Category: Yamanaka Y]] | |
| - | + | [[Category: Yamashita K]] | |
Current revision
Crystal structures of human orexin 2 receptor bound to the selective antagonist EMPA determined by serial femtosecond crystallography at SACLA
| |||||||||||
Categories: Homo sapiens | Large Structures | Pyrococcus abyssi GE5 | Fujiwara T | Hatsui T | Hirokawa T | Horita S | Im D | Iwata S | Joti Y | Kameshima T | Kimura K | Kobayashi T | Nakane T | Nango E | Rosenbaum DM | Sasanuma M | Shimamoto K | Shimamura T | Suno R | Tono K | Tsujimoto H | Wang J | Yabashi M | Yamamoto M | Yamanaka Y | Yamashita K
