2jnr

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[[Image:2jnr.jpg|left|200px]]
 
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{{Structure
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==Discovery and optimization of a natural HIV-1 entry inhibitor targeting the gp41 fusion peptide==
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|PDB= 2jnr |SIZE=350|CAPTION= <scene name='initialview01'>2jnr</scene>
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<StructureSection load='2jnr' size='340' side='right'caption='[[2jnr]]' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND=
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<table><tr><td colspan='2'>[[2jnr]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JNR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JNR FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR, 1 model</td></tr>
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|GENE=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jnr OCA], [https://pdbe.org/2jnr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jnr RCSB], [https://www.ebi.ac.uk/pdbsum/2jnr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jnr ProSAT]</span></td></tr>
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|DOMAIN=
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</table>
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|RELATEDENTRY=
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== Function ==
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jnr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jnr OCA], [http://www.ebi.ac.uk/pdbsum/2jnr PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2jnr RCSB]</span>
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[https://www.uniprot.org/uniprot/Q72502_9HIV1 Q72502_9HIV1] The envelope glyprotein gp160 precursor down-modulates cell surface CD4 antigen by interacting with it in the endoplasmic reticulum and blocking its transport to the cell surface.[RuleBase:RU004292]
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}}
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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'''Discovery and optimization of a natural HIV-1 entry inhibitor targeting the gp41 fusion peptide'''
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==Overview==
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A variety of molecules in human blood have been implicated in the inhibition of HIV-1. However, it remained elusive which circulating natural compounds are most effective in controlling viral replication in vivo. To identify natural HIV-1 inhibitors we screened a comprehensive peptide library generated from human hemofiltrate. The most potent fraction contained a 20-residue peptide, designated VIRUS-INHIBITORY PEPTIDE (VIRIP), corresponding to the C-proximal region of alpha1-antitrypsin, the most abundant circulating serine protease inhibitor. We found that VIRIP inhibits a wide variety of HIV-1 strains including those resistant to current antiretroviral drugs. Further analysis demonstrated that VIRIP blocks HIV-1 entry by interacting with the gp41 fusion peptide and showed that a few amino acid changes increase its antiretroviral potency by two orders of magnitude. Thus, as a highly specific natural inhibitor of the HIV-1 gp41 fusion peptide, VIRIP may lead to the development of another class of antiretroviral drugs.
A variety of molecules in human blood have been implicated in the inhibition of HIV-1. However, it remained elusive which circulating natural compounds are most effective in controlling viral replication in vivo. To identify natural HIV-1 inhibitors we screened a comprehensive peptide library generated from human hemofiltrate. The most potent fraction contained a 20-residue peptide, designated VIRUS-INHIBITORY PEPTIDE (VIRIP), corresponding to the C-proximal region of alpha1-antitrypsin, the most abundant circulating serine protease inhibitor. We found that VIRIP inhibits a wide variety of HIV-1 strains including those resistant to current antiretroviral drugs. Further analysis demonstrated that VIRIP blocks HIV-1 entry by interacting with the gp41 fusion peptide and showed that a few amino acid changes increase its antiretroviral potency by two orders of magnitude. Thus, as a highly specific natural inhibitor of the HIV-1 gp41 fusion peptide, VIRIP may lead to the development of another class of antiretroviral drugs.
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==About this Structure==
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Discovery and optimization of a natural HIV-1 entry inhibitor targeting the gp41 fusion peptide.,Munch J, Standker L, Adermann K, Schulz A, Schindler M, Chinnadurai R, Pohlmann S, Chaipan C, Biet T, Peters T, Meyer B, Wilhelm D, Lu H, Jing W, Jiang S, Forssmann WG, Kirchhoff F Cell. 2007 Apr 20;129(2):263-75. PMID:17448989<ref>PMID:17448989</ref>
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2JNR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JNR OCA].
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==Reference==
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Discovery and optimization of a natural HIV-1 entry inhibitor targeting the gp41 fusion peptide., Munch J, Standker L, Adermann K, Schulz A, Schindler M, Chinnadurai R, Pohlmann S, Chaipan C, Biet T, Peters T, Meyer B, Wilhelm D, Lu H, Jing W, Jiang S, Forssmann WG, Kirchhoff F, Cell. 2007 Apr 20;129(2):263-75. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17448989 17448989]
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[[Category: Single protein]]
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[[Category: Adermann, K.]]
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[[Category: Biet, T.]]
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[[Category: Chaipan, C.]]
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[[Category: Forssmann, W.]]
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[[Category: Jiang, S.]]
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[[Category: Jing, W.]]
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[[Category: Kirchhoff, F.]]
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[[Category: Lu, H.]]
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[[Category: Meyer, B.]]
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[[Category: Munch, J.]]
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[[Category: Peters, T.]]
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[[Category: Pohlmann, S.]]
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[[Category: Schulz, A.]]
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[[Category: Standker, L.]]
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[[Category: Wilhelm, D.]]
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[[Category: peptide complex]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 03:59:43 2008''
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 2jnr" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Synthetic construct]]
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[[Category: Adermann K]]
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[[Category: Biet T]]
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[[Category: Chaipan C]]
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[[Category: Forssmann W]]
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[[Category: Jiang S]]
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[[Category: Jing W]]
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[[Category: Kirchhoff F]]
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[[Category: Lu H]]
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[[Category: Meyer B]]
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[[Category: Munch J]]
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[[Category: Peters T]]
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[[Category: Pohlmann S]]
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[[Category: Schulz A]]
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[[Category: Standker L]]
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[[Category: Wilhelm D]]

Current revision

Discovery and optimization of a natural HIV-1 entry inhibitor targeting the gp41 fusion peptide

PDB ID 2jnr

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