6cvz

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==Crystal structure of the WD40-repeat of RFWD3==
==Crystal structure of the WD40-repeat of RFWD3==
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<StructureSection load='6cvz' size='340' side='right' caption='[[6cvz]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
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<StructureSection load='6cvz' size='340' side='right'caption='[[6cvz]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6cvz]] is a 3 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CVZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6CVZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6cvz]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6CVZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6CVZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/RING-type_E3_ubiquitin_transferase RING-type E3 ubiquitin transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.3.2.27 2.3.2.27] </span></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cvz OCA], [http://pdbe.org/6cvz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6cvz RCSB], [http://www.ebi.ac.uk/pdbsum/6cvz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6cvz ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6cvz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6cvz OCA], [https://pdbe.org/6cvz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6cvz RCSB], [https://www.ebi.ac.uk/pdbsum/6cvz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6cvz ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/RFWD3_HUMAN RFWD3_HUMAN]] Fanconi anemia, complementation group W (FANCW): A disorder affecting all bone marrow elements and resulting in anemia, leukopenia and thrombopenia. It is associated with cardiac, renal and limb malformations, dermal pigmentary changes, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage) and defective DNA repair (PubMed:28575657). The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:28575657</ref>
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[https://www.uniprot.org/uniprot/RFWD3_HUMAN RFWD3_HUMAN] Fanconi anemia, complementation group W (FANCW): A disorder affecting all bone marrow elements and resulting in anemia, leukopenia and thrombopenia. It is associated with cardiac, renal and limb malformations, dermal pigmentary changes, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage) and defective DNA repair (PubMed:28575657). The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:28575657</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/RFWD3_HUMAN RFWD3_HUMAN]] E3 ubiquitin-protein ligase required for the repair of DNA interstrand cross-links (ICL) in response to DNA damage (PubMed:21504906, PubMed:21558276, PubMed:26474068, PubMed:28575657, PubMed:28575658). Plays a key role in RPA-mediated DNA damage signaling and repair (PubMed:21504906, PubMed:21558276, PubMed:26474068, PubMed:28575657, PubMed:28575658). Acts by mediating ubiquitination of the RPA complex (RPA1, RPA2 and RPA3 subunits) and RAD51 at stalled replication forks, leading to remove them from DNA damage sites and promote homologous recombination (PubMed:26474068, PubMed:28575657, PubMed:28575658). Also mediates the ubiquitination of p53/TP53 in the late response to DNA damage, and acts as a positive regulator of p53/TP53 stability, thereby regulating the G1/S DNA damage checkpoint (PubMed:20173098). May act by catalyzing the formation of short polyubiquitin chains on p53/TP53 that are not targeted to the proteasome (PubMed:20173098). In response to ionizing radiation, interacts with MDM2 and enhances p53/TP53 ubiquitination, possibly by restricting MDM2 from extending polyubiquitin chains on ubiquitinated p53/TP53 (PubMed:20173098).<ref>PMID:20173098</ref> <ref>PMID:21504906</ref> <ref>PMID:21558276</ref> <ref>PMID:26474068</ref> <ref>PMID:28575657</ref> <ref>PMID:28575658</ref>
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[https://www.uniprot.org/uniprot/RFWD3_HUMAN RFWD3_HUMAN] E3 ubiquitin-protein ligase required for the repair of DNA interstrand cross-links (ICL) in response to DNA damage (PubMed:21504906, PubMed:21558276, PubMed:26474068, PubMed:28575657, PubMed:28575658). Plays a key role in RPA-mediated DNA damage signaling and repair (PubMed:21504906, PubMed:21558276, PubMed:26474068, PubMed:28575657, PubMed:28575658). Acts by mediating ubiquitination of the RPA complex (RPA1, RPA2 and RPA3 subunits) and RAD51 at stalled replication forks, leading to remove them from DNA damage sites and promote homologous recombination (PubMed:26474068, PubMed:28575657, PubMed:28575658). Also mediates the ubiquitination of p53/TP53 in the late response to DNA damage, and acts as a positive regulator of p53/TP53 stability, thereby regulating the G1/S DNA damage checkpoint (PubMed:20173098). May act by catalyzing the formation of short polyubiquitin chains on p53/TP53 that are not targeted to the proteasome (PubMed:20173098). In response to ionizing radiation, interacts with MDM2 and enhances p53/TP53 ubiquitination, possibly by restricting MDM2 from extending polyubiquitin chains on ubiquitinated p53/TP53 (PubMed:20173098).<ref>PMID:20173098</ref> <ref>PMID:21504906</ref> <ref>PMID:21558276</ref> <ref>PMID:26474068</ref> <ref>PMID:28575657</ref> <ref>PMID:28575658</ref>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The functional and biological significance of selected CASP13 targets are described by the authors of the structures. The structural biologists discuss the most interesting structural features of the target proteins and assess whether these features were correctly reproduced in the predictions submitted to the CASP13 experiment.
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Target highlights in CASP13: Experimental target structures through the eyes of their authors.,Lepore R, Kryshtafovych A, Alahuhta M, Veraszto HA, Bomble YJ, Bufton JC, Bullock AN, Caba C, Cao H, Davies OR, Desfosses A, Dunne M, Fidelis K, Goulding CW, Gurusaran M, Gutsche I, Harding CJ, Hartmann MD, Hayes CS, Joachimiak A, Leiman PG, Loppnau P, Lovering AL, Lunin VV, Michalska K, Mir-Sanchis I, Mitra AK, Moult J, Phillips GN Jr, Pinkas DM, Rice PA, Tong Y, Topf M, Walton JD, Schwede T Proteins. 2019 Aug 23. doi: 10.1002/prot.25805. PMID:31442339<ref>PMID:31442339</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6cvz" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Ubiquitin protein ligase 3D structures|Ubiquitin protein ligase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: RING-type E3 ubiquitin transferase]]
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[[Category: Homo sapiens]]
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[[Category: Arrowsmith, C H]]
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[[Category: Large Structures]]
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[[Category: BROWN, P J]]
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[[Category: Arrowsmith CH]]
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[[Category: Bountra, C]]
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[[Category: BROWN PJ]]
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[[Category: DONG, A]]
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[[Category: Bountra C]]
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[[Category: Edwards, A M]]
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[[Category: DONG A]]
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[[Category: HUTCHINSON, A]]
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[[Category: Edwards AM]]
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[[Category: LOPPNAU, P]]
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[[Category: HUTCHINSON A]]
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[[Category: SEITOVA, A]]
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[[Category: LOPPNAU P]]
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[[Category: Structural genomic]]
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[[Category: SEITOVA A]]
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[[Category: TEMPEL, W]]
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[[Category: TEMPEL W]]
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[[Category: TONG, Y]]
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[[Category: TONG Y]]
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[[Category: WEI, Y]]
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[[Category: WEI Y]]
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[[Category: Rfwd3]]
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[[Category: Sgc]]
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[[Category: Transferase]]
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[[Category: Wd40-repeat]]
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Current revision

Crystal structure of the WD40-repeat of RFWD3

PDB ID 6cvz

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