This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6dcl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:33, 13 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of UP1 bound to pri-miRNA-18a terminal loop==
==Crystal structure of UP1 bound to pri-miRNA-18a terminal loop==
-
<StructureSection load='6dcl' size='340' side='right' caption='[[6dcl]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='6dcl' size='340' side='right'caption='[[6dcl]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6dcl]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DCL OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6DCL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6dcl]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6DCL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6DCL FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.497&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6dcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dcl OCA], [http://pdbe.org/6dcl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6dcl RCSB], [http://www.ebi.ac.uk/pdbsum/6dcl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6dcl ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6dcl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6dcl OCA], [https://pdbe.org/6dcl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6dcl RCSB], [https://www.ebi.ac.uk/pdbsum/6dcl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6dcl ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
-
[[http://www.uniprot.org/uniprot/ROA1_HUMAN ROA1_HUMAN]] Amyotrophic lateral sclerosis;Inclusion body myopathy with Paget disease of bone and frontotemporal dementia. The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:23455423</ref> The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:23455423</ref>
+
[https://www.uniprot.org/uniprot/ROA1_HUMAN ROA1_HUMAN] Amyotrophic lateral sclerosis;Inclusion body myopathy with Paget disease of bone and frontotemporal dementia. The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:23455423</ref> The disease is caused by mutations affecting the gene represented in this entry.<ref>PMID:23455423</ref>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/ROA1_HUMAN ROA1_HUMAN]] Involved in the packaging of pre-mRNA into hnRNP particles, transport of poly(A) mRNA from the nucleus to the cytoplasm and may modulate splice site selection. May play a role in HCV RNA replication.<ref>PMID:17229681</ref>
+
[https://www.uniprot.org/uniprot/ROA1_HUMAN ROA1_HUMAN] Involved in the packaging of pre-mRNA into hnRNP particles, transport of poly(A) mRNA from the nucleus to the cytoplasm and may modulate splice site selection. May play a role in HCV RNA replication.<ref>PMID:17229681</ref>
 +
 
 +
==See Also==
 +
*[[Nucleoprotein 3D structures|Nucleoprotein 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Kooshapur, H]]
+
[[Category: Homo sapiens]]
-
[[Category: Sattler, M]]
+
[[Category: Large Structures]]
-
[[Category: Complex]]
+
[[Category: Kooshapur H]]
-
[[Category: Hnrnp a1]]
+
[[Category: Sattler M]]
-
[[Category: Rna]]
+
-
[[Category: Rna binding protein]]
+
-
[[Category: Rna binding protein-rna complex]]
+
-
[[Category: Rrm]]
+

Current revision

Crystal structure of UP1 bound to pri-miRNA-18a terminal loop

PDB ID 6dcl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools