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| ==Crystal Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii== | | ==Crystal Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii== |
- | <StructureSection load='2h6r' size='340' side='right' caption='[[2h6r]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='2h6r' size='340' side='right'caption='[[2h6r]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2h6r]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Metja Metja]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H6R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2H6R FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2h6r]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanocaldococcus_jannaschii_DSM_2661 Methanocaldococcus jannaschii DSM 2661]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2H6R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2H6R FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">TPIA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=243232 METJA])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Triose-phosphate_isomerase Triose-phosphate isomerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.3.1.1 5.3.1.1] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2h6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h6r OCA], [https://pdbe.org/2h6r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2h6r RCSB], [https://www.ebi.ac.uk/pdbsum/2h6r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2h6r ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2h6r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2h6r OCA], [http://pdbe.org/2h6r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2h6r RCSB], [http://www.ebi.ac.uk/pdbsum/2h6r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2h6r ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/TPIS_METJA TPIS_METJA] |
| == Evolutionary Conservation == | | == Evolutionary Conservation == |
| [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| ==See Also== | | ==See Also== |
- | *[[Triose Phosphate Isomerase|Triose Phosphate Isomerase]] | + | *[[Triose phosphate isomerase 3D structures|Triose phosphate isomerase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Metja]] | + | [[Category: Large Structures]] |
- | [[Category: Triose-phosphate isomerase]] | + | [[Category: Methanocaldococcus jannaschii DSM 2661]] |
- | [[Category: Balaram, H]] | + | [[Category: Balaram H]] |
- | [[Category: Balaram, P]] | + | [[Category: Balaram P]] |
- | [[Category: Banerjee, M]] | + | [[Category: Banerjee M]] |
- | [[Category: Gayathri, P]] | + | [[Category: Gayathri P]] |
- | [[Category: Murthy, M R.N]] | + | [[Category: Murthy MRN]] |
- | [[Category: Vijayalakshmi, A]] | + | [[Category: Vijayalakshmi A]] |
- | [[Category: Beta-alpha barrel]]
| + | |
- | [[Category: Isomerase]]
| + | |
| Structural highlights
Function
TPIS_METJA
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
The crystal structure of a recombinant triosephosphate isomerase (TIM) from the archaeabacterium Methanocaldococcus jannaschii has been determined at a resolution of 2.3 A using X-ray diffraction data from a tetartohedrally twinned crystal. M. jannaschii TIM (MjTIM) is tetrameric, as suggested by solution studies and from the crystal structure, as is the case for two other structurally characterized archaeal TIMs. The archaeabacterial TIMs are shorter compared with the dimeric TIMs; the insertions in the dimeric TIMs occur in the vicinity of the tetramer interface, resulting in a hindrance to tetramerization in the dimeric TIMs. The charge distribution on the surface of the archaeal TIMs also facilitates tetramerization. Analysis of the barrel interactions in TIMs suggests that these interactions are unlikely to account for the thermal stability of the archaeal TIMs. A novelty of the unliganded structure of MjTIM is the complete absence of electron density for the loop 6 residues. The disorder of this loop could be ascribed to a missing salt bridge between residues at the N- and C-terminal ends of the loop in MjTIM.
Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii.,Gayathri P, Banerjee M, Vijayalakshmi A, Azeez S, Balaram H, Balaram P, Murthy MR Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):206-20. Epub 2007, Jan 16. PMID:17242514[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Gayathri P, Banerjee M, Vijayalakshmi A, Azeez S, Balaram H, Balaram P, Murthy MR. Structure of triosephosphate isomerase (TIM) from Methanocaldococcus jannaschii. Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):206-20. Epub 2007, Jan 16. PMID:17242514 doi:10.1107/S0907444906046488
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