6a5h

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(New page: '''Unreleased structure''' The entry 6a5h is ON HOLD until Paper Publication Authors: Zhang, B., Ge, H.M. Description: The structure of [4+2] and [6+4] cyclase in the biosynthetic path...)
Current revision (09:18, 22 November 2023) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6a5h is ON HOLD until Paper Publication
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==The structure of [4+2] and [6+4] cyclase in the biosynthetic pathway of unidentified natural product==
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<StructureSection load='6a5h' size='340' side='right'caption='[[6a5h]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6a5h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Nocardia_tenerifensis_NBRC_101015 Nocardia tenerifensis NBRC 101015]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A5H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6A5H FirstGlance]. <br>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.618&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6a5h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a5h OCA], [https://pdbe.org/6a5h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6a5h RCSB], [https://www.ebi.ac.uk/pdbsum/6a5h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6a5h ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Pericyclic reactions are powerful transformations for the construction of carbon-carbon and carbon-heteroatom bonds in organic synthesis. Their role in biosynthesis is increasingly apparent, and mechanisms by which pericyclases can catalyse reactions are of major interest(1). [4+2] cycloadditions (Diels-Alder reactions) have been widely used in organic synthesis(2) for the formation of six-membered rings and are now well-established in biosynthesis(3-6). [6+4] and other 'higher-order' cycloadditions were predicted(7) in 1965, and are now increasingly common in the laboratory despite challenges arising from the generation of a highly strained ten-membered ring system(8,9). However, although enzyme-catalysed [6+4] cycloadditions have been proposed(10-12), they have not been proven to occur. Here we demonstrate a group of enzymes that catalyse a pericyclic [6+4] cycloaddition, which is a crucial step in the biosynthesis of streptoseomycin-type natural products. This type of pericyclase catalyses [6+4] and [4+2] cycloadditions through a single ambimodal transition state, which is consistent with previous proposals(11,12). The [6+4] product is transformed to a less stable [4+2] adduct via a facile Cope rearrangement, and the [4+2] adduct is converted into the natural product enzymatically. Crystal structures of three pericyclases, computational simulations of potential energies and molecular dynamics, and site-directed mutagenesis establish the mechanism of this transformation. This work shows how enzymes are able to catalyse concerted pericyclic reactions involving ambimodal transition states.
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Authors: Zhang, B., Ge, H.M.
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Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.,Zhang B, Wang KB, Wang W, Wang X, Liu F, Zhu J, Shi J, Li LY, Han H, Xu K, Qiao HY, Zhang X, Jiao RH, Houk KN, Liang Y, Tan RX, Ge HM Nature. 2019 Apr;568(7750):122-126. doi: 10.1038/s41586-019-1021-x. Epub 2019 Mar, 13. PMID:30867595<ref>PMID:30867595</ref>
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Description: The structure of [4+2] and [6+4] cyclase in the biosynthetic pathway of unidentified natural product
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Zhang, B]]
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<div class="pdbe-citations 6a5h" style="background-color:#fffaf0;"></div>
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[[Category: Ge, H.M]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Large Structures]]
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[[Category: Nocardia tenerifensis NBRC 101015]]
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[[Category: Ge HM]]
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[[Category: Zhang B]]

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The structure of [4+2] and [6+4] cyclase in the biosynthetic pathway of unidentified natural product

PDB ID 6a5h

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