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5y33

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==Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals polymannuronate specificity==
==Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals polymannuronate specificity==
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<StructureSection load='5y33' size='340' side='right' caption='[[5y33]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
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<StructureSection load='5y33' size='340' side='right'caption='[[5y33]], [[Resolution|resolution]] 1.54&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5y33]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y33 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5Y33 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5y33]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Flavobacterium_sp._UMI-01 Flavobacterium sp. UMI-01]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5Y33 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5Y33 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5y33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y33 OCA], [http://pdbe.org/5y33 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5y33 RCSB], [http://www.ebi.ac.uk/pdbsum/5y33 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5y33 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.54&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5y33 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5y33 OCA], [https://pdbe.org/5y33 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5y33 RCSB], [https://www.ebi.ac.uk/pdbsum/5y33 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5y33 ProSAT]</span></td></tr>
</table>
</table>
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<div style="background-color:#fffaf0;">
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== Function ==
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== Publication Abstract from PubMed ==
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[https://www.uniprot.org/uniprot/A0A068PC91_9FLAO A0A068PC91_9FLAO]
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FlAlyA is an endolytic enzyme with a preference for polymannuronate. The crystal structure and mutagenesis studies elucidated that the structural variations at outer uronate-binding subsites +2, +3 and -2 control the enzymatic properties of PL-7 family enzymes. Lys158 mutations changed the pH dependency and enhanced the production of mono- and disaccharides.
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Structural basis for controlling the enzymatic properties of polymannuronate preferred alginate lyase FlAlyA from the PL-7 family.,Qin HM, Miyakawa T, Inoue A, Nishiyama R, Nakamura A, Asano A, Ojima T, Tanokura M Chem Commun (Camb). 2018 Jan 11;54(5):555-558. doi: 10.1039/c7cc06523j. PMID:29292806<ref>PMID:29292806</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 5y33" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Miyakawa, T]]
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[[Category: Flavobacterium sp. UMI-01]]
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[[Category: Nakamura, A]]
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[[Category: Large Structures]]
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[[Category: Qin, H M]]
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[[Category: Miyakawa T]]
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[[Category: Tanokura, M]]
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[[Category: Nakamura A]]
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[[Category: Alginate lyase]]
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[[Category: Qin H-M]]
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[[Category: B-elimination reaction]]
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[[Category: Tanokura M]]
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[[Category: B-jelly roll fold]]
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[[Category: Endolytic enzyme]]
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[[Category: Structural protein]]
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Current revision

Crystal structure of alginate lyase from Flavobacterium sp. UMI-01 reveals polymannuronate specificity

PDB ID 5y33

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