This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
2np5
From Proteopedia
(Difference between revisions)
| (12 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | [[Image:2np5.gif|left|200px]] | ||
| - | + | ==Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.== | |
| - | + | <StructureSection load='2np5' size='340' side='right'caption='[[2np5]], [[Resolution|resolution]] 1.80Å' scene=''> | |
| - | + | == Structural highlights == | |
| - | | | + | <table><tr><td colspan='2'>[[2np5]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodococcus_jostii_RHA1 Rhodococcus jostii RHA1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NP5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NP5 FirstGlance]. <br> |
| - | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8Å</td></tr> | |
| - | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=LMT:DODECYL-BETA-D-MALTOSIDE'>LMT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NDS:ETHYL+DIMETHYL+AMMONIO+PROPANE+SULFONATE'>NDS</scene></td></tr> | |
| - | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2np5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2np5 OCA], [https://pdbe.org/2np5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2np5 RCSB], [https://www.ebi.ac.uk/pdbsum/2np5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2np5 ProSAT], [https://www.topsan.org/Proteins/MCSG/2np5 TOPSAN]</span></td></tr> | |
| - | + | </table> | |
| - | + | == Function == | |
| - | + | [https://www.uniprot.org/uniprot/Q0S914_RHOJR Q0S914_RHOJR] | |
| - | + | == Evolutionary Conservation == | |
| - | + | [[Image:Consurf_key_small.gif|200px|right]] | |
| - | + | Check<jmol> | |
| - | + | <jmolCheckbox> | |
| - | == | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/np/2np5_consurf.spt"</scriptWhenChecked> |
| - | + | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |
| - | [[Category: | + | <text>to colour the structure by Evolutionary Conservation</text> |
| - | [[Category: | + | </jmolCheckbox> |
| - | [[Category: Chruszcz | + | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2np5 ConSurf]. |
| - | [[Category: Cymborowski | + | <div style="clear:both"></div> |
| - | [[Category: Edwards | + | __TOC__ |
| - | [[Category: Evdokimova | + | </StructureSection> |
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Rhodococcus jostii RHA1]] |
| - | [[Category: Minor | + | [[Category: Chruszcz M]] |
| - | [[Category: Savchenko | + | [[Category: Cymborowski M]] |
| - | + | [[Category: Edwards A]] | |
| - | + | [[Category: Evdokimova E]] | |
| - | + | [[Category: Joachimiak A]] | |
| - | + | [[Category: Kagan O]] | |
| - | + | [[Category: Minor W]] | |
| - | + | [[Category: Savchenko A]] | |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of a transcriptional regulator (RHA1_ro04179) from Rhodococcus sp. Rha1.
| |||||||||||
