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| | ==Solution structure analysis of the phage T4 endoribonuclease RegB== | | ==Solution structure analysis of the phage T4 endoribonuclease RegB== |
| - | <StructureSection load='2hx6' size='340' side='right' caption='[[2hx6]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | + | <StructureSection load='2hx6' size='340' side='right'caption='[[2hx6]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2hx6]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bpt4 Bpt4]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX6 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2HX6 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2hx6]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_T4 Escherichia virus T4]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2HX6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2HX6 FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">regB, 61.9 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10665 BPT4])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2hx6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx6 OCA], [http://pdbe.org/2hx6 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2hx6 RCSB], [http://www.ebi.ac.uk/pdbsum/2hx6 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx6 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2hx6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2hx6 OCA], [https://pdbe.org/2hx6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2hx6 RCSB], [https://www.ebi.ac.uk/pdbsum/2hx6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2hx6 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/REGB_BPT4 REGB_BPT4]] Essential to the early nucleolytic processing of a number of T4 messenger RNAs. Specifically cleaves GGAG sequences found in intergenic regions, mainly in translation initiation sites. | + | [https://www.uniprot.org/uniprot/REGB_BPT4 REGB_BPT4] Essential to the early nucleolytic processing of a number of T4 messenger RNAs. Specifically cleaves GGAG sequences found in intergenic regions, mainly in translation initiation sites. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bpt4]] | + | [[Category: Escherichia virus T4]] |
| - | [[Category: Bontems, F]] | + | [[Category: Large Structures]] |
| - | [[Category: Odaert, B]] | + | [[Category: Bontems F]] |
| - | [[Category: Saida, F]] | + | [[Category: Odaert B]] |
| - | [[Category: Uzan, M]] | + | [[Category: Saida F]] |
| - | [[Category: Alpha/beta fold]]
| + | [[Category: Uzan M]] |
| - | [[Category: Hydrolase]]
| + | |
| Structural highlights
Function
REGB_BPT4 Essential to the early nucleolytic processing of a number of T4 messenger RNAs. Specifically cleaves GGAG sequences found in intergenic regions, mainly in translation initiation sites.
Publication Abstract from PubMed
The RegB endoribonuclease participates in the bacteriophage T4 life cycle by favoring early messenger RNA breakdown. RegB specifically cleaves GGAG sequences found in intergenic regions, mainly in translation initiation sites. Its activity is very low but can be enhanced up to 100-fold by the ribosomal 30 S subunit or by ribosomal protein S1. RegB has no significant sequence homology to any known protein. Here we used NMR to solve the structure of RegB and map its interactions with two RNA substrates. We also generated a collection of mutants affected in RegB function. Our results show that, despite the absence of any sequence homology, RegB has structural similarities with two Escherichia coli ribonucleases involved in mRNA inactivation on translating ribosomes: YoeB and RelE. Although these ribonucleases have different catalytic sites, we propose that RegB is a new member of the RelE/YoeB structural and functional family of ribonucleases specialized in mRNA inactivation within the ribosome.
Structural and functional studies of RegB, a new member of a family of sequence-specific ribonucleases involved in mRNA inactivation on the ribosome.,Odaert B, Saida F, Aliprandi P, Durand S, Crechet JB, Guerois R, Laalami S, Uzan M, Bontems F J Biol Chem. 2007 Jan 19;282(3):2019-28. Epub 2006 Oct 17. PMID:17046813[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Odaert B, Saida F, Aliprandi P, Durand S, Crechet JB, Guerois R, Laalami S, Uzan M, Bontems F. Structural and functional studies of RegB, a new member of a family of sequence-specific ribonucleases involved in mRNA inactivation on the ribosome. J Biol Chem. 2007 Jan 19;282(3):2019-28. Epub 2006 Oct 17. PMID:17046813 doi:M608271200
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