This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2imr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:03, 21 February 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of amidohydrolase DR_0824 from Deinococcus radiodurans==
==Crystal structure of amidohydrolase DR_0824 from Deinococcus radiodurans==
-
<StructureSection load='2imr' size='340' side='right' caption='[[2imr]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
+
<StructureSection load='2imr' size='340' side='right'caption='[[2imr]], [[Resolution|resolution]] 1.78&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2imr]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"micrococcus_radiodurans"_raj_et_al._1960 "micrococcus radiodurans" raj et al. 1960]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IMR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2IMR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2imr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2IMR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2IMR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.78&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2imr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2imr OCA], [http://pdbe.org/2imr PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2imr RCSB], [http://www.ebi.ac.uk/pdbsum/2imr PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2imr ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/2imr TOPSAN]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2imr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2imr OCA], [https://pdbe.org/2imr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2imr RCSB], [https://www.ebi.ac.uk/pdbsum/2imr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2imr ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/2imr TOPSAN]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/MQNX_DEIRA MQNX_DEIRA]] Catalyzes the deamination of aminodeoxyfutalosine (AFL) into futalosine (FL). To a lesser extent, can also deaminate 5'-deoxyadenosine, 5'-methylthioadenosine, 2'-deoxyadenosine, adenosine, 1-(6-amino-9H-purin-9-yl)-1-deoxy-N-ethyl-beta-D-ribofuranuronamide (NECA), and S-adenosylhomocysteine.<ref>PMID:23972005</ref>
+
[https://www.uniprot.org/uniprot/MQNX_DEIRA MQNX_DEIRA] Catalyzes the deamination of aminodeoxyfutalosine (AFL) into futalosine (FL). To a lesser extent, can also deaminate 5'-deoxyadenosine, 5'-methylthioadenosine, 2'-deoxyadenosine, adenosine, 1-(6-amino-9H-purin-9-yl)-1-deoxy-N-ethyl-beta-D-ribofuranuronamide (NECA), and S-adenosylhomocysteine.<ref>PMID:23972005</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 23: Line 24:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Micrococcus radiodurans raj et al. 1960]]
+
[[Category: Deinococcus radiodurans]]
-
[[Category: Burley, S K]]
+
[[Category: Large Structures]]
-
[[Category: Eswaramoorthy, S]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: Swaminathan, S]]
+
[[Category: Swaminathan S]]
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+
-
[[Category: Zinc]]
+

Current revision

Crystal structure of amidohydrolase DR_0824 from Deinococcus radiodurans

PDB ID 2imr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools