2ntz

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[[Image:2ntz.jpg|left|200px]]
 
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{{Structure
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==Structure of a ParB-DNA complex reveals a double B-box interaction==
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|PDB= 2ntz |SIZE=350|CAPTION= <scene name='initialview01'>2ntz</scene>, resolution 3.35&Aring;
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<StructureSection load='2ntz' size='340' side='right'caption='[[2ntz]], [[Resolution|resolution]] 3.35&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DC:2&#39;-DEOXYCYTIDINE-5&#39;-MONOPHOSPHATE'>DC</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=DT:THYMIDINE-5&#39;-MONOPHOSPHATE'>DT</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
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<table><tr><td colspan='2'>[[2ntz]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_virus_P1 Escherichia virus P1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NTZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NTZ FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.35&#8491;</td></tr>
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|GENE= parb ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10678 Enterobacteria phage P1])
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ntz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ntz OCA], [https://pdbe.org/2ntz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ntz RCSB], [https://www.ebi.ac.uk/pdbsum/2ntz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ntz ProSAT]</span></td></tr>
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|RELATEDENTRY=[[1zx4|1ZX4]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ntz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ntz OCA], [http://www.ebi.ac.uk/pdbsum/2ntz PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2ntz RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/Q38420_9CAUD Q38420_9CAUD]
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nt/2ntz_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ntz ConSurf].
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<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The plasmid partition process is essential for plasmid propagation and is mediated by par systems, consisting of centromere-like sites and two proteins, ParA and ParB. In the first step of partition by the archetypical P1 system, ParB binds a complicated centromere-like site to form a large nucleoprotein segrosome. ParB is a dimeric DNA-binding protein that can bridge between both A-boxes and B-boxes located on the centromere. Its helix-turn-helix domains bind A-boxes and the dimer domain binds B-boxes. Binding of the first ParB dimer nucleates the remaining ParB molecules onto the centromere site, which somehow leads to the formation of a condensed segrosome superstructure. To further understand this unique DNA spreading capability of ParB, we crystallized and determined the structure of a 1:2 ParB-(142-333):A3-B2-box complex to 3.35A resolution. The structure reveals a remarkable four-way, protein-DNA bridged complex in which both ParB helix-turn-helix domains simultaneously bind adjacent A-boxes and the dimer domain bridges between two B-boxes. The multibridging capability and the novel dimer domain-B-box interaction, which juxtaposes the DNA sites close in space, suggests a mechanism for the formation of the wrapped solenoid-like segrosome superstructure. This multibridging capability of ParB is likely critical in its partition complex formation and pairing functions.
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'''Structure of a ParB-DNA complex reveals a double B-box interaction'''
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Structure of a four-way bridged ParB-DNA complex provides insight into P1 segrosome assembly.,Schumacher MA, Mansoor A, Funnell BE J Biol Chem. 2007 Apr 6;282(14):10456-64. Epub 2007 Feb 9. PMID:17293348<ref>PMID:17293348</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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==About this Structure==
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</div>
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2NTZ is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_p1 Enterobacteria phage p1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NTZ OCA].
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<div class="pdbe-citations 2ntz" style="background-color:#fffaf0;"></div>
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[[Category: Enterobacteria phage p1]]
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== References ==
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[[Category: Single protein]]
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<references/>
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[[Category: Funnell, B E.]]
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__TOC__
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[[Category: Mansoor, A.]]
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</StructureSection>
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[[Category: Schumacher, M A.]]
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[[Category: Escherichia virus P1]]
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[[Category: para]]
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[[Category: Large Structures]]
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[[Category: parb]]
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[[Category: Funnell BE]]
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[[Category: partition]]
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[[Category: Mansoor A]]
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[[Category: segregation]]
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[[Category: Schumacher MA]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:08:22 2008''
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Current revision

Structure of a ParB-DNA complex reveals a double B-box interaction

PDB ID 2ntz

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