Dihedral/Index

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''This in an index page pointing to several resources on these topics.''
''This in an index page pointing to several resources on these topics.''
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<!--[[Image:Ramachandran plot general 100K.jpg|right|200px]]-->
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[[Image:Phipsi-AH.gif|right]]
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* '''Definitions of phi and psi''':
* '''Definitions of phi and psi''':
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[[Image:Ramachandran-inspection-AH.png|right|200px]]
* '''[[Tutorial:Ramachandran_Plot_Inspection|Ramachandran Plot Inspection]]'''
* '''[[Tutorial:Ramachandran_Plot_Inspection|Ramachandran Plot Inspection]]'''
** A special "Tutorial" page in Proteopedia (by [[User:Angel_Herraez|Angel Herráez]]) and an equivalent [http://biomodel.uah.es/model1j/prot/Ramachandran.htm page in Spanish]
** A special "Tutorial" page in Proteopedia (by [[User:Angel_Herraez|Angel Herráez]]) and an equivalent [http://biomodel.uah.es/model1j/prot/Ramachandran.htm page in Spanish]
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[[Image:Dihedral-angles-anim.gif]][[Image:Rama-youtube-EM.gif]][[Image:Ramachandran plot general 100K.jpg|right|250px]]
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* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]'''
* '''[[Tutorial:Ramachandran_principle_and_phi_psi_angles|The Ramachandran Principle, Phi (φ) and Psi (ψ) Angles in Proteins]]'''
** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]])
** A special "Tutorial" page in Proteopedia (by [[User:Eric_Martz|Eric Martz]])
** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation):
** That tutorial repurposed as a '''slideshow''' with animated images (a Google Docs presentation):
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*** [http://tinyurl.com/RamachandranPrinciple slideshow] in English including explanation of dihedral angles with animated illustration
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*** [http://tinyurl.com/RamachandranPrinciple Slideshow] in English including explanation of dihedral angles with animated illustration
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*** [http://tinyurl.com/PrincipioRamachandran slideshow] in Spanish
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*** [http://tinyurl.com/PrincipioRamachandran Slideshow] in Spanish
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** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.
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** The slideshow is also available as a '''[https://tinyurl.com/RamachandranPrincipleYoutube YouTube Video]''' (in English), including explanation of dihedral angles with animated illustration.<imagemap>
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default [http://tinyurl.com/RamachandranPrincipleYoutube]
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** A '''quiz''' to self-assess understanding of the tutorial or the slideshow:
** A '''quiz''' to self-assess understanding of the tutorial or the slideshow:
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*** [[Dihedral/Ramachandran_Principle_Quiz|quiz in English]]
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*** [[Dihedral/Ramachandran_Principle_Quiz|Quiz in English]]
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*** [[Dihedral/Ramachandran_Principle_Quiz (Spanish)|quiz in Spanish]]
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*** [[Dihedral/Ramachandran_Principle_Quiz (Spanish)|Quiz in Spanish]]
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Current revision

Dihedral angles in proteins and the Ramachandran plot

This in an index page pointing to several resources on these topics.

  • Definitions of phi and psi:
  • Simplified 3D models in JSmol that can be rotated with your mouse, and set to various dihedral angles: in English and Spanish.
  • Animated explanation identifying the 4 atoms for phi in a polypeptide, and rotating it clockwise (positive angles) and counter-clockwise (negative angles):
  • Dihedral angles in proteins: an interactive display of phi and psi dihedral angles using a model of a tripeptide.
    • A regular page in Proteopedia.
    • Simple presentation, featuring a 3D model with planes, clashes and animations.
  • Phi and Psi Angles: a more detailed, guided explanation of determination and display of angles in the 3D model.
    • A regular page in Proteopedia.
  • The Ramachandran Plot
    • A regular page in Proteopedia. Featured in an article in Biochemistry and Molecular Biology Education, 2010.
    • Extensive description with instructions on how to display the Ramachandran plot for any protein structure.
  • Ramachandran Plot Inspection
    • A special "Tutorial" page in Proteopedia (by Angel Herráez) and an equivalent page in Spanish
    • Interactive Ramachandran plot with many controls and details, connecting the Ramachandran plot with the display on the 3D model. Includes planes, clashes and animations.
    • You can display phi and psi for any pair of amino acids in any protein structure.
Image:Dihedral-angles-anim.gifImage:Rama-youtube-EM.gif
  • Another animation of phi and psi angles connected to a Ramachandran plot (by David Jollie)
  • Ramachandran outlier showcases a special case where a residue is not conforming to the favored values in the Ramachandran plot.

Proteopedia Page Contributors and Editors (what is this?)

Eric Martz, Angel Herraez

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