This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
5xz4
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
| - | '''Unreleased structure''' | ||
| - | The | + | ==The X-tay structure of Bumblebee PGRP-SA== |
| + | <StructureSection load='5xz4' size='340' side='right'caption='[[5xz4]], [[Resolution|resolution]] 1.41Å' scene=''> | ||
| + | == Structural highlights == | ||
| + | <table><tr><td colspan='2'>[[5xz4]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombus Bombus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5XZ4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5XZ4 FirstGlance]. <br> | ||
| + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.41Å</td></tr> | ||
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5xz4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5xz4 OCA], [https://pdbe.org/5xz4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5xz4 RCSB], [https://www.ebi.ac.uk/pdbsum/5xz4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5xz4 ProSAT]</span></td></tr> | ||
| + | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A452CSL6_9HYME A0A452CSL6_9HYME] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | The peptidoglycan recognition protein SAs (PGRP-SAs) from Bombus ignitus (Bi-PGRP-SA), Apis mellifera (Am-PGRP-SA), and Megachile rotundata PGRP-SA (Mr-PGRP-SA) exhibit an intrinsic ability to preferentially bind to Dap-type peptidoglycan (PGN) from Bacillus subtilis rather than Lys-type PGN from Micrococcus luteus This ability is more analogous to the binding exhibited by PGRP-LCx and PGRP-SD than to that exhibited by PGRP-SA in Drosophila Moreover, Bi-PGRP-SA and Am-PGRP-SA share greater sequence identity with Drosophila PGRP-LCx than with PGRP-SD and retain several conserved contact residues, including His(37)/His(38), His(60)/His(61), Trp(66)/Trp(67), Ala(150)/Ala(151), and Thr(151)/Thr(152) However, the corresponding contact residue Arg(85) is not a major anchor residue in bees (e.g., bumblebees, honeybees, and leaf-cutting bees), and an in silico analysis indicated that the residues Thr(151)/Thr(152) and Ser(153)/Ser(154) of Bi-PGRP-SA and Am-PGRP-SA are deduced to be anchor residues. In addition, the nonconserved residues Asp(67) in Bi-PGRP-SA and Mr-PGRP-SA and His(68) in Am-PGRP-SA are deduced to be involved in the binding to Dap-type PGNs in bumblebees, honeybees, and leaf-cutting bees. We conclude that the structures and specificities of PGRP-SAs in bees are more analogous to those of PGRP-LCx than to those of Drosophila PGRP-SA. This phenomenon might be explained by the fact that the evolutionary clade of Hymenoptera is more ancient than that of Diptera. | ||
| - | + | Structural Insights into the Preferential Binding of PGRP-SAs from Bumblebees and Honeybees to Dap-Type Peptidoglycans Rather than Lys-Type Peptidoglycans.,Liu Y, Zhao X, Huang J, Chen M, An J J Immunol. 2019 Jan 1;202(1):249-259. doi: 10.4049/jimmunol.1800439. Epub 2018, Dec 3. PMID:30510067<ref>PMID:30510067</ref> | |
| - | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
| - | [[Category: | + | </div> |
| - | [[Category: | + | <div class="pdbe-citations 5xz4" style="background-color:#fffaf0;"></div> |
| - | [[Category: Huang | + | == References == |
| - | [[Category: Liu | + | <references/> |
| - | [[Category: | + | __TOC__ |
| + | </StructureSection> | ||
| + | [[Category: Bombus]] | ||
| + | [[Category: Large Structures]] | ||
| + | [[Category: An JD]] | ||
| + | [[Category: Huang JX]] | ||
| + | [[Category: Liu YJ]] | ||
| + | [[Category: Zhao XM]] | ||
Current revision
The X-tay structure of Bumblebee PGRP-SA
| |||||||||||
Categories: Bombus | Large Structures | An JD | Huang JX | Liu YJ | Zhao XM
