2jtw

From Proteopedia

(Difference between revisions)

Current revision

Solution structure of TM7 bound to DPC micelles

Structural highlights

2jtw is a 1 chain structure with sequence from Saccharomyces cerevisiae S288C. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

VPP1_YEAST Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (PubMed:11278748, PubMed:1491220, PubMed:8798414). V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments (PubMed:11278748, PubMed:1491220). Is present only in vacuolar V-ATPase complexes; enzymes containing this subunit have a 4-fold higher ratio of proton transport to ATP hydrolysis than complexes containing the Golgi/endosomal isoform and undergo reversible dissociation of V1 and V0 in response to glucose depletion (PubMed:11278748, PubMed:8798414).^[1] ^[2] ^[3]

Publication Abstract from PubMed

Many peptides, proteins, and drugs interact with biological membranes, and knowing the mode of binding is essential to understanding their biological functions. To obtain the complete orientation and immersion depth of such a compound, the membrane-mimetic system (micelle) is placed in an aqueous buffer containing the soluble and inert paramagnetic contrast agent Gd(DTPA-BMA). Paramagnetic relaxation enhancements (PREs) of a specific nucleus then depend only on its distance from the surface. The positioning of a structurally characterized compound can be obtained by least-squares fitting of experimental PREs to the micelle center position. This liquid-state NMR approach, which does not rely on isotopic labeling or chemical modification, has been applied to determine the location of the presumed transmembrane region 7 of yeast V-ATPase (TM7) and the membrane-bound antimicrobial peptide CM15 in micelles. TM7 binds in a trans-micelle orientation with the N-terminus being slightly closer to the surface than the C-terminus. CM15 is immersed unexpectedly deep into the micelle with the more hydrophilic side of the helix being closer to the surface than the hydrophobic one.

Positioning of Micelle-Bound Peptides by Paramagnetic Relaxation Enhancements.,Zangger K, Respondek M, Gobl C, Hohlweg W, Rasmussen K, Grampp G, Madl T J Phys Chem B. 2009 Mar 3. PMID:19256533^[4]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Kawasaki-Nishi S, Nishi T, Forgac M. Yeast V-ATPase complexes containing different isoforms of the 100-kDa a-subunit differ in coupling efficiency and in vivo dissociation. J Biol Chem. 2001 May 25;276(21):17941-8. Epub 2001 Mar 2. PMID:11278748 doi:http://dx.doi.org/10.1074/jbc.M010790200
↑ Manolson MF, Proteau D, Jones EW. Evidence for a conserved 95-120 kDa subunit associated with and essential for activity of V-ATPases. J Exp Biol. 1992 Nov;172:105-12. PMID:1491220
↑ Leng XH, Manolson MF, Liu Q, Forgac M. Site-directed mutagenesis of the 100-kDa subunit (Vph1p) of the yeast vacuolar (H+)-ATPase. J Biol Chem. 1996 Sep 13;271(37):22487-93. PMID:8798414
↑ Zangger K, Respondek M, Gobl C, Hohlweg W, Rasmussen K, Grampp G, Madl T. Positioning of Micelle-Bound Peptides by Paramagnetic Relaxation Enhancements. J Phys Chem B. 2009 Mar 3. PMID:19256533 doi:10.1021/jp808501x

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2jtw"

Categories: Large Structures | Saccharomyces cerevisiae S288C | Madl T | Respondek M | Zangger K

@@ Line 1: / Line 1: @@
 ==Solution structure of TM7 bound to DPC micelles==
-<StructureSection load='2jtw' size='340' side='right' caption='[[2jtw]], [[NMR_Ensembles_of_Models | 16 NMR models]]' scene=''>
+<StructureSection load='2jtw' size='340' side='right'caption='[[2jtw]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2jtw]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2JTW FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2jtw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae_S288C Saccharomyces cerevisiae S288C]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2JTW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2JTW FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2jtw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtw OCA], [http://pdbe.org/2jtw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2jtw RCSB], [http://www.ebi.ac.uk/pdbsum/2jtw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtw ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2jtw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2jtw OCA], [https://pdbe.org/2jtw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2jtw RCSB], [https://www.ebi.ac.uk/pdbsum/2jtw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2jtw ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/VPP1_YEAST VPP1_YEAST] Subunit of the V0 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons (PubMed:11278748, PubMed:1491220, PubMed:8798414). V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments (PubMed:11278748, PubMed:1491220). Is present only in vacuolar V-ATPase complexes; enzymes containing this subunit have a 4-fold higher ratio of proton transport to ATP hydrolysis than complexes containing the Golgi/endosomal isoform and undergo reversible dissociation of V1 and V0 in response to glucose depletion (PubMed:11278748, PubMed:8798414).<ref>PMID:11278748</ref> <ref>PMID:1491220</ref> <ref>PMID:8798414</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 19: / Line 22: @@
 __TOC__
 </StructureSection>
-[[Category: Madl, T]]
+[[Category: Large Structures]]
-[[Category: Respondek, M]]
+[[Category: Saccharomyces cerevisiae S288C]]
-[[Category: Zangger, K]]
+[[Category: Madl T]]
-[[Category: Membrane protein]]
+[[Category: Respondek M]]
-[[Category: Micelle-bound]]
+[[Category: Zangger K]]
-[[Category: Transmembrane]]

2jtw

From Proteopedia

Current revision

Solution structure of TM7 bound to DPC micelles

Structural highlights

Function

Publication Abstract from PubMed

References

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