6a56

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==AJLec from the Sea Anemone Anthopleura japonica==
==AJLec from the Sea Anemone Anthopleura japonica==
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<StructureSection load='6a56' size='340' side='right' caption='[[6a56]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
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<StructureSection load='6a56' size='340' side='right'caption='[[6a56]], [[Resolution|resolution]] 1.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6a56]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Anthopleura_japonica Anthopleura japonica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A56 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6A56 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6a56]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Anthopleura_japonica Anthopleura japonica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6A56 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6A56 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=LAT:BETA-LACTOSE'>LAT</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.2&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene>, <scene name='pdbligand=PRD_900004:beta-lactose'>PRD_900004</scene>, <scene name='pdbligand=SNN:L-3-AMINOSUCCINIMIDE'>SNN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6a56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a56 OCA], [http://pdbe.org/6a56 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6a56 RCSB], [http://www.ebi.ac.uk/pdbsum/6a56 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6a56 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6a56 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6a56 OCA], [https://pdbe.org/6a56 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6a56 RCSB], [https://www.ebi.ac.uk/pdbsum/6a56 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6a56 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/A0A2Z5WLM1_ANTJA A0A2Z5WLM1_ANTJA]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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A novel galactose-specific lectin, AJLec (18.5 kDa), was isolated from the sea anemone, Anthopleura japonica. AJLec was characterized using the hemagglutination assay, isothermal titration calorimetry (ITC), and glycoconjugate microarray analysis and we found that AJLec has a specificity for galactose monomers and beta-linked terminal galactose residues in complex carbohydrates, but not for N-acetylgalactosamine (GalNAc), which is commonly recognized by galactose-binding lectins. The primary structure of AJLec did not show homology with known lectins, and a crystal structural analysis also revealed a unique homodimeric structure. The crystal structure of AJLec complexed with lactose was solved by measuring the sulfur single-wavelength anomalous diffraction (S-SAD) phasing with an in-house Cu Kalpha source method. This analysis revealed that the galactose residue in lactose was recognized via its O2, O3, and O4 hydroxyl groups and ring oxygen by calcium coordination and two hydrogen bonds with residues in the carbohydrate-binding site, which demonstrated strict specificity for the beta-linked terminal galactose in this lectin.
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Identification, Characterization, and X-ray Crystallographic Analysis of a Novel Type of Lectin AJLec from the Sea Anemone Anthopleura japonica.,Unno H, Nakamura A, Mori S, Goda S, Yamaguchi K, Hiemori K, Tateno H, Hatakeyama T Sci Rep. 2018 Aug 1;8(1):11516. doi: 10.1038/s41598-018-29498-0. PMID:30068923<ref>PMID:30068923</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6a56" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Anthopleura japonica]]
[[Category: Anthopleura japonica]]
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[[Category: Hatakeyama, T]]
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[[Category: Large Structures]]
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[[Category: Unno, H]]
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[[Category: Hatakeyama T]]
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[[Category: Ajlec]]
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[[Category: Unno H]]
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[[Category: Gyractis japonica]]
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[[Category: Lectin]]
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[[Category: Sea anemone]]
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[[Category: Sugar binding protein]]
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Current revision

AJLec from the Sea Anemone Anthopleura japonica

PDB ID 6a56

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