This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6d4o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:32, 13 March 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Eubacterium eligens beta-glucuronidase bound to an amoxapine-glucuronide conjugate==
==Eubacterium eligens beta-glucuronidase bound to an amoxapine-glucuronide conjugate==
-
<StructureSection load='6d4o' size='340' side='right' caption='[[6d4o]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='6d4o' size='340' side='right'caption='[[6d4o]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6d4o]] is a 1 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D4O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6D4O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6d4o]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lachnospira_eligens Lachnospira eligens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D4O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6D4O FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUV:(5aR,9aR)-2-chloro-11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5a,6,9,9a-tetrahydrodibenzo[b,f][1,4]oxazepine'>FUV</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucuronidase Beta-glucuronidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.31 3.2.1.31] </span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FUV:(5aR,9aR)-2-chloro-11-(4-beta-D-glucopyranuronosylpiperazin-1-yl)-5a,6,9,9a-tetrahydrodibenzo[b,f][1,4]oxazepine'>FUV</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6d4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d4o OCA], [http://pdbe.org/6d4o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6d4o RCSB], [http://www.ebi.ac.uk/pdbsum/6d4o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6d4o ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6d4o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d4o OCA], [https://pdbe.org/6d4o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6d4o RCSB], [https://www.ebi.ac.uk/pdbsum/6d4o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6d4o ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A174ZZA3_9FIRM A0A174ZZA3_9FIRM]
 +
 +
==See Also==
 +
*[[Galactosidase 3D structures|Galactosidase 3D structures]]
 +
*[[Glucuronisidase 3D structures|Glucuronisidase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-glucuronidase]]
+
[[Category: Lachnospira eligens]]
-
[[Category: Pellock, S J]]
+
[[Category: Large Structures]]
-
[[Category: Redinbo, M R]]
+
[[Category: Pellock SJ]]
-
[[Category: Walton, W G]]
+
[[Category: Redinbo MR]]
-
[[Category: Glycosyl hydrolase]]
+
[[Category: Walton WG]]
-
[[Category: Hydrolase]]
+

Current revision

Eubacterium eligens beta-glucuronidase bound to an amoxapine-glucuronide conjugate

PDB ID 6d4o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools