This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2oh3

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:18, 28 December 2023) (edit) (undo)
 
(10 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2oh3.gif|left|200px]]
 
-
{{Structure
+
==Crystal structure of COG1633: Uncharacterized conserved protein (ZP_00055496.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution==
-
|PDB= 2oh3 |SIZE=350|CAPTION= <scene name='initialview01'>2oh3</scene>, resolution 2.00&Aring;
+
<StructureSection load='2oh3' size='340' side='right'caption='[[2oh3]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND= <scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene>
+
<table><tr><td colspan='2'>[[2oh3]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Magnetospirillum_magnetotacticum_MS-1 Magnetospirillum magnetotacticum MS-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OH3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OH3 FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
|GENE= ZP_00055496.1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2 Bacteria])
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=IMD:IMIDAZOLE'>IMD</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PGE:TRIETHYLENE+GLYCOL'>PGE</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-
|DOMAIN=<span class='plainlinks'>[http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=cd01045 Ferritin_like_AB], [http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=pfam02915 Rubrerythrin]</span>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2oh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oh3 OCA], [https://pdbe.org/2oh3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2oh3 RCSB], [https://www.ebi.ac.uk/pdbsum/2oh3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2oh3 ProSAT], [https://www.topsan.org/Proteins/JCSG/2oh3 TOPSAN]</span></td></tr>
-
|RELATEDENTRY=
+
</table>
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2oh3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2oh3 OCA], [http://www.ebi.ac.uk/pdbsum/2oh3 PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2oh3 RCSB]</span>
+
== Function ==
-
}}
+
[https://www.uniprot.org/uniprot/Q2VZ87_MAGSA Q2VZ87_MAGSA]
-
 
+
== Evolutionary Conservation ==
-
'''Crystal structure of COG1633: Uncharacterized conserved protein (ZP_00055496.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution'''
+
[[Image:Consurf_key_small.gif|200px|right]]
-
 
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
==About this Structure==
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oh/2oh3_consurf.spt"</scriptWhenChecked>
-
2OH3 is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/Bacteria Bacteria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OH3 OCA].
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
[[Category: Bacteria]]
+
<text>to colour the structure by Evolutionary Conservation</text>
-
[[Category: Protein complex]]
+
</jmolCheckbox>
-
[[Category: JCSG, Joint Center for Structural Genomics.]]
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2oh3 ConSurf].
-
[[Category: cog1633: uncharacterized conserved protein]]
+
<div style="clear:both"></div>
-
[[Category: jcsg]]
+
__TOC__
-
[[Category: joint center for structural genomic]]
+
</StructureSection>
-
[[Category: protein structure initiative]]
+
[[Category: Large Structures]]
-
[[Category: psi-2]]
+
[[Category: Magnetospirillum magnetotacticum MS-1]]
-
[[Category: rubrerythrin]]
+
-
[[Category: structural genomic]]
+
-
[[Category: zp_00055496 1]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:17:44 2008''
+

Current revision

Crystal structure of COG1633: Uncharacterized conserved protein (ZP_00055496.1) from Magnetospirillum magnetotacticum MS-1 at 2.00 A resolution

PDB ID 2oh3

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2oh3"
Personal tools