6h0l

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:56, 12 September 2018) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
-
'''Unreleased structure'''
 
-
The entry 6h0l is ON HOLD until Paper Publication
+
==Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy==
 +
<StructureSection load='6h0l' size='340' side='right' caption='[[6h0l]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
 +
== Structural highlights ==
 +
<table><tr><td colspan='2'>[[6h0l]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Gallus_gallus Gallus gallus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H0L OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H0L FirstGlance]. <br>
 +
</td></tr><tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Lysozyme Lysozyme], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.17 3.2.1.17] </span></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h0l FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h0l OCA], [http://pdbe.org/6h0l PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h0l RCSB], [http://www.ebi.ac.uk/pdbsum/6h0l PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h0l ProSAT]</span></td></tr>
 +
</table>
 +
== Function ==
 +
[[http://www.uniprot.org/uniprot/LYSC_CHICK LYSC_CHICK]] Lysozymes have primarily a bacteriolytic function; those in tissues and body fluids are associated with the monocyte-macrophage system and enhance the activity of immunoagents. Has bacteriolytic activity against M.luteus.<ref>PMID:22044478</ref>
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
X-ray free-electron lasers (XFELs) enable novel experiments because of their high peak brilliance and femtosecond pulse duration. However, non-superconducting XFELs offer repetition rates of only 10-120 Hz, placing significant demands on beam time and sample consumption. We describe serial femtosecond crystallography experiments performed at the European XFEL, the first MHz repetition rate XFEL, delivering 1.128 MHz X-ray pulse trains at 10 Hz. Given the short spacing between pulses, damage caused by shock waves launched by one XFEL pulse on sample probed by subsequent pulses is a concern. To investigate this issue, we collected data from lysozyme microcrystals, exposed to a ~15 mum XFEL beam. Under these conditions, data quality is independent of whether the first or subsequent pulses of the train were used for data collection. We also analyzed a mixture of microcrystals of jack bean proteins, from which the structure of native, magnesium-containing concanavalin A was determined.
-
Authors: Gruenbein, M.L., Gorel, A., Stricker, M., Bean, R., Bielecki, J., Doerner, K., Hartmann, E., Hilpert, M., Kloos, M., Letrun, R., Sztuk-Dambietz, J., Mancuso, A., Meserschmidt, M., Nass-Kovacs, G., Ramilli, M., Roome, C.M., Sato, T., Doak, R.B., Shoeman, R.L., Foucar, L., Colletier, J.P., Barends, T.R.M., Stan, C., Schlichting, I.
+
Megahertz data collection from protein microcrystals at an X-ray free-electron laser.,Grunbein ML, Bielecki J, Gorel A, Stricker M, Bean R, Cammarata M, Dorner K, Frohlich L, Hartmann E, Hauf S, Hilpert M, Kim Y, Kloos M, Letrun R, Messerschmidt M, Mills G, Nass Kovacs G, Ramilli M, Roome CM, Sato T, Scholz M, Sliwa M, Sztuk-Dambietz J, Weik M, Weinhausen B, Al-Qudami N, Boukhelef D, Brockhauser S, Ehsan W, Emons M, Esenov S, Fangohr H, Kaukher A, Kluyver T, Lederer M, Maia L, Manetti M, Michelat T, Munnich A, Pallas F, Palmer G, Previtali G, Raab N, Silenzi A, Szuba J, Venkatesan S, Wrona K, Zhu J, Doak RB, Shoeman RL, Foucar L, Colletier JP, Mancuso AP, Barends TRM, Stan CA, Schlichting I Nat Commun. 2018 Aug 28;9(1):3487. doi: 10.1038/s41467-018-05953-4. PMID:30154468<ref>PMID:30154468</ref>
-
Description: Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy
+
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
-
[[Category: Unreleased Structures]]
+
</div>
-
[[Category: Nass-Kovacs, G]]
+
<div class="pdbe-citations 6h0l" style="background-color:#fffaf0;"></div>
 +
== References ==
 +
<references/>
 +
__TOC__
 +
</StructureSection>
 +
[[Category: Gallus gallus]]
 +
[[Category: Lysozyme]]
 +
[[Category: Barends, T R.M]]
[[Category: Bean, R]]
[[Category: Bean, R]]
-
[[Category: Stricker, M]]
 
-
[[Category: Sato, T]]
 
-
[[Category: Sztuk-Dambietz, J]]
 
-
[[Category: Shoeman, R.L]]
 
-
[[Category: Hilpert, M]]
 
-
[[Category: Ramilli, M]]
 
[[Category: Bielecki, J]]
[[Category: Bielecki, J]]
-
[[Category: Gorel, A]]
+
[[Category: Colletier, J P]]
-
[[Category: Colletier, J.P]]
+
[[Category: Doak, R B]]
[[Category: Doerner, K]]
[[Category: Doerner, K]]
[[Category: Foucar, L]]
[[Category: Foucar, L]]
-
[[Category: Mancuso, A]]
+
[[Category: Gorel, A]]
 +
[[Category: Gruenbein, M L]]
 +
[[Category: Hartmann, E]]
 +
[[Category: Hilpert, M]]
[[Category: Kloos, M]]
[[Category: Kloos, M]]
[[Category: Letrun, R]]
[[Category: Letrun, R]]
-
[[Category: Doak, R.B]]
+
[[Category: Mancuso, A]]
 +
[[Category: Meserschmidt, M]]
 +
[[Category: Nass-Kovacs, G]]
 +
[[Category: Ramilli, M]]
 +
[[Category: Roome, C M]]
 +
[[Category: Sato, T]]
[[Category: Schlichting, I]]
[[Category: Schlichting, I]]
-
[[Category: Barends, T.R.M]]
+
[[Category: Shoeman, R L]]
[[Category: Stan, C]]
[[Category: Stan, C]]
-
[[Category: Roome, C.M]]
+
[[Category: Stricker, M]]
-
[[Category: Gruenbein, M.L]]
+
[[Category: Sztuk-Dambietz, J]]
-
[[Category: Meserschmidt, M]]
+
[[Category: Free-electron laser]]
-
[[Category: Hartmann, E]]
+
[[Category: Hydrolase]]
 +
[[Category: Lectin]]
 +
[[Category: Serial crystallography]]

Current revision

Hen egg-white lysozyme structure determined with data from the EuXFEL, 9.22 keV photon energy

6h0l, resolution 1.90Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools