This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2lt9

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:57, 1 May 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==The solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger==
==The solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger==
-
<StructureSection load='2lt9' size='340' side='right' caption='[[2lt9]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+
<StructureSection load='2lt9' size='340' side='right'caption='[[2lt9]]' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2lt9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LT9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2LT9 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2lt9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LT9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LT9 FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Slc8a3 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2lt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lt9 OCA], [http://pdbe.org/2lt9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2lt9 RCSB], [http://www.ebi.ac.uk/pdbsum/2lt9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2lt9 ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lt9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lt9 OCA], [https://pdbe.org/2lt9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lt9 RCSB], [https://www.ebi.ac.uk/pdbsum/2lt9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lt9 ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/NAC3_MOUSE NAC3_MOUSE] Mediates the electrogenic exchange of Ca(2+) against Na(+) ions across the cell membrane, and thereby contributes to the regulation of cytoplasmic Ca(2+) levels and Ca(2+)-dependent cellular processes. Contributes to cellular Ca(2+) homeostasis in excitable cells, both in muscle and in brain (PubMed:14722618, PubMed:21593315). In a first phase, voltage-gated channels mediate the rapid increase of cytoplasmic Ca(2+) levels due to release of Ca(2+) stores from the endoplasmic reticulum. SLC8A3 mediates the export of Ca(2+) from the cell during the next phase, so that cytoplasmic Ca(2+) levels rapidly return to baseline (PubMed:14722618, PubMed:21593315). Contributes to Ca(2+) transport during excitation-contraction coupling in muscle (PubMed:14722618). In neurons, contributes to the rapid decrease of cytoplasmic Ca(2+) levels back to baseline after neuronal activation, and thereby contributes to modulate synaptic plasticity, learning and memory (PubMed:21593315). Required for normal oligodendrocyte differentiation and for normal myelination (PubMed:21959935). Mediates Ca(2+) efflux from mitochondria and contributes to mitochondrial Ca(2+) ion homeostasis (PubMed:24616101). Isoform 1 displays higher calcium exchanger activity than isoform 2, probably because isoform 1 has a lower threshold for activation by cytoplasmic Ca(2+) (PubMed:24616101).<ref>PMID:14722618</ref> <ref>PMID:21593315</ref> <ref>PMID:21959935</ref> <ref>PMID:24616101</ref>
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Lk3 transgenic mice]]
+
[[Category: Large Structures]]
-
[[Category: Breukels, V]]
+
[[Category: Mus musculus]]
-
[[Category: Touw, W G]]
+
[[Category: Breukels V]]
-
[[Category: Vuister, G W]]
+
[[Category: Touw WG]]
-
[[Category: Calcium binding domain 2]]
+
[[Category: Vuister GW]]
-
[[Category: Cbd]]
+
-
[[Category: Cbd2]]
+
-
[[Category: Metal binding protein]]
+
-
[[Category: Naca exchanger]]
+
-
[[Category: Ncx]]
+
-
[[Category: Ncx3]]
+

Current revision

The solution structure of Ca2+ binding domain 2B of the third isoform of the Na+/Ca2+ exchanger

PDB ID 2lt9

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools