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| | ==Structural Basis of DNA Recognition by the Effector Domain of Klebsiella pneumoniae PmrA== | | ==Structural Basis of DNA Recognition by the Effector Domain of Klebsiella pneumoniae PmrA== |
| - | <StructureSection load='2m87' size='340' side='right' caption='[[2m87]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | + | <StructureSection load='2m87' size='340' side='right'caption='[[2m87]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2m87]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_st512-k30bo Klebsiella pneumoniae subsp. pneumoniae st512-k30bo]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2M87 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2M87 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2m87]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Klebsiella_pneumoniae_subsp._pneumoniae_ST512-K30BO Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2M87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2M87 FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BN18_3635 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1185418 Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2m87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2m87 OCA], [http://pdbe.org/2m87 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2m87 RCSB], [http://www.ebi.ac.uk/pdbsum/2m87 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2m87 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2m87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2m87 OCA], [https://pdbe.org/2m87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2m87 RCSB], [https://www.ebi.ac.uk/pdbsum/2m87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2m87 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Klebsiella pneumoniae subsp. pneumoniae st512-k30bo]] | + | [[Category: Klebsiella pneumoniae subsp. pneumoniae ST512-K30BO]] |
| - | [[Category: Chen, C]] | + | [[Category: Large Structures]] |
| - | [[Category: Lou, Y C]] | + | [[Category: Chen C]] |
| - | [[Category: Wang, I]] | + | [[Category: Lou YC]] |
| - | [[Category: Dna-binding]] | + | [[Category: Wang I]] |
| - | [[Category: Effector domain]]
| + | |
| - | [[Category: Pmra]]
| + | |
| - | [[Category: Signaling protein]]
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| - | [[Category: Two-component signaling system]]
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| Structural highlights
Publication Abstract from PubMed
Klebsiella pneumoniae PmrA is a polymyxin-resistance-associated response regulator. The C-terminal effector/DNA-binding domain of PmrA (PmrAC) recognizes tandem imperfect repeat sequences on the promoters of genes to induce antimicrobial peptide resistance after phosphorylation and dimerization of its N-terminal receiver domain (PmrAN). However, structural information concerning how phosphorylation of the response regulator enhances DNA recognition remains elusive. To gain insights, we determined the nuclear magnetic resonance solution structure of PmrAC and characterized the interactions between PmrAC or BeF3--activated full-length PmrA (PmrAF) and two DNA sequences from the pbgP promoter of K. pneumoniae. We showed that PmrAC binds to the PmrA box, which was verified to contain two half-sites, 5'-CTTAAT-3' and 5'-CCTAAG-3', in a head-to-tail fashion with much stronger affinity to the first than the second site without cooperativity. The structural basis for the PmrAC-DNA complex was investigated using HADDOCK docking and confirmed by paramagnetic relaxation enhancement. Unlike PmrAC, PmrAF recognizes the two sites simultaneously and specifically. In the PmrAF-DNA complex, PmrAN may maintain an activated homodimeric conformation analogous to that in the free form and the interactions between two PmrAC molecules aid in bending and binding of the DNA duplex for transcription activation.
Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae.,Lou YC, Wang I, Rajasekaran M, Kao YF, Ho MR, Hsu ST, Chou SH, Wu SH, Chen C Nucleic Acids Res. 2013 Dec 25. PMID:24371275[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Lou YC, Wang I, Rajasekaran M, Kao YF, Ho MR, Hsu ST, Chou SH, Wu SH, Chen C. Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae. Nucleic Acids Res. 2013 Dec 25. PMID:24371275 doi:http://dx.doi.org/10.1093/nar/gkt1345
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