2otr

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:04, 1 May 2024) (edit) (undo)
 
(12 intermediate revisions not shown.)
Line 1: Line 1:
-
[[Image:2otr.jpg|left|200px]]
 
-
{{Structure
+
==Solution Structure of Conserved Hypothetical Protein HP0892 from Helicobacter pylori==
-
|PDB= 2otr |SIZE=350|CAPTION= <scene name='initialview01'>2otr</scene>
+
<StructureSection load='2otr' size='340' side='right'caption='[[2otr]]' scene=''>
-
|SITE=
+
== Structural highlights ==
-
|LIGAND=
+
<table><tr><td colspan='2'>[[2otr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OTR FirstGlance]. <br>
-
|ACTIVITY=
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-
|GENE=
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2otr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otr OCA], [https://pdbe.org/2otr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2otr RCSB], [https://www.ebi.ac.uk/pdbsum/2otr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2otr ProSAT]</span></td></tr>
-
|DOMAIN=
+
</table>
-
|RELATEDENTRY=
+
== Function ==
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2otr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2otr OCA], [http://www.ebi.ac.uk/pdbsum/2otr PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=2otr RCSB]</span>
+
[https://www.uniprot.org/uniprot/O25552_HELPY O25552_HELPY]
-
}}
+
== Evolutionary Conservation ==
-
 
+
[[Image:Consurf_key_small.gif|200px|right]]
-
'''Solution Structure of Conserved Hypothetical Protein HP0892 from Helicobacter pylori'''
+
Check<jmol>
-
 
+
<jmolCheckbox>
-
 
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ot/2otr_consurf.spt"</scriptWhenChecked>
-
==About this Structure==
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
-
2OTR is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OTR OCA].
+
<text>to colour the structure by Evolutionary Conservation</text>
-
 
+
</jmolCheckbox>
-
==Reference==
+
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2otr ConSurf].
-
Solution structure of conserved hypothetical protein HP0892 from Helicobacter pylori., Han KD, Park SJ, Jang SB, Lee BJ, Proteins. 2008 Feb 1;70(2):599-602. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/17957768 17957768]
+
<div style="clear:both"></div>
-
[[Category: Helicobacter pylori]]
+
__TOC__
-
[[Category: Single protein]]
+
</StructureSection>
-
[[Category: Han, K D.]]
+
[[Category: Helicobacter pylori 26695]]
-
[[Category: Jang, S B.]]
+
[[Category: Large Structures]]
-
[[Category: Lee, B J.]]
+
[[Category: Han KD]]
-
[[Category: Park, S J.]]
+
[[Category: Jang SB]]
-
[[Category: anti-parallel beta sheet]]
+
[[Category: Lee BJ]]
-
[[Category: structural genomic]]
+
[[Category: Park SJ]]
-
[[Category: unknown function]]
+
-
 
+
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Mon Mar 31 04:22:59 2008''
+

Current revision

Solution Structure of Conserved Hypothetical Protein HP0892 from Helicobacter pylori

PDB ID 2otr

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools