6h9z

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Current revision (06:47, 3 July 2019) (edit) (undo)
 
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'''Unreleased structure'''
 
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The entry 6h9z is ON HOLD
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==Molecular bases of histo-blood group antigen recognition by the most common human rotavirus==
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<StructureSection load='6h9z' size='340' side='right'caption='[[6h9z]], [[Resolution|resolution]] 1.51&Aring;' scene=''>
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== Structural highlights ==
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<table><tr><td colspan='2'>[[6h9z]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Group_a_rotaviruses Group a rotaviruses]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6H9Z OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6H9Z FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VP4 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=28875 Group A rotaviruses])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6h9z FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6h9z OCA], [http://pdbe.org/6h9z PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6h9z RCSB], [http://www.ebi.ac.uk/pdbsum/6h9z PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6h9z ProSAT]</span></td></tr>
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</table>
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Rotavirus is the leading agent causing acute gastroenteritis in young children, with the P[8] genotype accounting for more than 80% of infections in humans. The molecular bases for binding of the VP8* domain from P[8] VP4 spike protein to its cellular receptor, the secretory H type-1 antigen (Fuc-alpha1,2-Gal-beta1,3-GlcNAc; H1), and to its precursor lacto-N-biose (Gal-beta1,3-GlcNAc; LNB) have been determined. The resolution of P[8] VP8* crystal structures in complex with H1 antigen and LNB and site-directed mutagenesis experiments revealed that both glycans bind to the P[8] VP8* protein through a binding pocket shared with other members of the P[II] genogroup (i.e.: P[4], P[6] and P[19]). Our results show that the L-fucose moiety from H1 only displays indirect contacts with P[8] VP8*. However, the induced conformational changes in the LNB moiety increase the ligand affinity by two-fold, as measured by surface plasmon resonance (SPR), providing a molecular explanation for the different susceptibility to rotavirus infection between secretor and non-secretor individuals. The unexpected interaction of P[8] VP8* with LNB, a building block of type-1 human milk oligosaccharides, resulted in inhibition of rotavirus infection, highlighting the role and possible application of this disaccharide as an antiviral. While key amino acids in the H1/LNB binding pocket were highly conserved in members of the P[II] genogroup, differences were found in ligand affinities among distinct P[8] genetic lineages. The variation in affinities were explained by subtle structural differences induced by amino acid changes in the vicinity of the binding pocket, providing a fine-tuning mechanism for glycan binding in P[8] rotavirus.
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Authors: Ciges-Tomas, J.R., Gozalbo-Rovira, R., Vila-Vicent, S., Buesa, J., Santiso-Bellon, C., Monedero, V., Yebra, M.J., Rodriguez-Diaz, J., Marina, A.
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Unraveling the role of the secretor antigen in human rotavirus attachment to histo-blood group antigens.,Gozalbo-Rovira R, Ciges-Tomas JR, Vila-Vicent S, Buesa J, Santiso-Bellon C, Monedero V, Yebra MJ, Marina A, Rodriguez-Diaz J PLoS Pathog. 2019 Jun 21;15(6):e1007865. doi: 10.1371/journal.ppat.1007865. PMID:31226167<ref>PMID:31226167</ref>
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Description: Molecular bases of histo-blood group antigen recognition by the most common human rotavirus
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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[[Category: Unreleased Structures]]
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</div>
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[[Category: Monedero, V]]
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<div class="pdbe-citations 6h9z" style="background-color:#fffaf0;"></div>
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[[Category: Ciges-Tomas, J.R]]
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== References ==
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<references/>
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__TOC__
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</StructureSection>
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[[Category: Group a rotaviruses]]
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[[Category: Large Structures]]
[[Category: Buesa, J]]
[[Category: Buesa, J]]
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[[Category: Ciges-Tomas, J R]]
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[[Category: Gozalbo-Rovira, R]]
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[[Category: Marina, A]]
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[[Category: Monedero, V]]
[[Category: Rodriguez-Diaz, J]]
[[Category: Rodriguez-Diaz, J]]
[[Category: Santiso-Bellon, C]]
[[Category: Santiso-Bellon, C]]
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[[Category: Yebra, M.J]]
 
[[Category: Vila-Vicent, S]]
[[Category: Vila-Vicent, S]]
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[[Category: Marina, A]]
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[[Category: Yebra, M J]]
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[[Category: Gozalbo-Rovira, R]]
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[[Category: Histo-blood group antigen rotavirus]]
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[[Category: Viral protein]]

Current revision

Molecular bases of histo-blood group antigen recognition by the most common human rotavirus

PDB ID 6h9z

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