6d0o
From Proteopedia
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==rdpA dioxygenase holoenzyme== | ==rdpA dioxygenase holoenzyme== | ||
| - | <StructureSection load='6d0o' size='340' side='right' caption='[[6d0o]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='6d0o' size='340' side='right'caption='[[6d0o]], [[Resolution|resolution]] 2.30Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[6d0o]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D0O OCA]. For a <b>guided tour on the structure components</b> use [ | + | <table><tr><td colspan='2'>[[6d0o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sphingobium_herbicidovorans_NBRC_16415 Sphingobium herbicidovorans NBRC 16415]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6D0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6D0O FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
| - | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AKG:2-OXOGLUTARIC+ACID'>AKG</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6d0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6d0o OCA], [https://pdbe.org/6d0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6d0o RCSB], [https://www.ebi.ac.uk/pdbsum/6d0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6d0o ProSAT]</span></td></tr> |
</table> | </table> | ||
== Function == | == Function == | ||
| - | [ | + | [https://www.uniprot.org/uniprot/RDPA_SPHHM RDPA_SPHHM] Involved in the degradation of the phenoxypropionate herbicides. Catalyzes the enantiospecific cleavage of the ether bond in the herbicid R-dichlorprop ((R)-2-(2,4-dichlorophenoxy)propionate)(R-2,4-DP) and R-mecoprop ((R)-2-(4-chloro-2-methylphenoxy)propionate)(R-2,4-MCPP). It can also accept (RS)-4-chlorophenoxypropanoate, however it can only accept 2-oxoglutarate as oxygen acceptor.<ref>PMID:16731970</ref> <ref>PMID:16820480</ref> <ref>PMID:11423952</ref> |
== References == | == References == | ||
<references/> | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Large Structures]] |
| - | [[Category: | + | [[Category: Sphingobium herbicidovorans NBRC 16415]] |
| - | [[Category: | + | [[Category: Evdokimov A]] |
| - | [[Category: | + | [[Category: Rydel TJ]] |
| - | [[Category: | + | [[Category: Sturman EJ]] |
| - | [[Category: | + | [[Category: Zheng M]] |
Current revision
rdpA dioxygenase holoenzyme
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