|
|
| (One intermediate revision not shown.) |
| Line 1: |
Line 1: |
| | | | |
| | ==Nizp1-C2HR zinc finger structure== | | ==Nizp1-C2HR zinc finger structure== |
| - | <StructureSection load='2nab' size='340' side='right' caption='[[2nab]], [[NMR_Ensembles_of_Models | 15 NMR models]]' scene=''> | + | <StructureSection load='2nab' size='340' side='right'caption='[[2nab]]' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2nab]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NAB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2NAB FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2nab]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NAB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NAB FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2naa|2naa]]</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nab FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nab OCA], [https://pdbe.org/2nab PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nab RCSB], [https://www.ebi.ac.uk/pdbsum/2nab PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nab ProSAT]</span></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Znf496, Nizp11, Zfp496, Zkscan17 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2nab FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nab OCA], [http://pdbe.org/2nab PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2nab RCSB], [http://www.ebi.ac.uk/pdbsum/2nab PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2nab ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/ZN496_MOUSE ZN496_MOUSE]] DNA-binding transcription factor that can both act as an activator and a repressor.<ref>PMID:15169884</ref> <ref>PMID:17521633</ref> | + | [https://www.uniprot.org/uniprot/ZN496_MOUSE ZN496_MOUSE] DNA-binding transcription factor that can both act as an activator and a repressor.<ref>PMID:15169884</ref> <ref>PMID:17521633</ref> |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 24: |
Line 22: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Lk3 transgenic mice]] | + | [[Category: Large Structures]] |
| - | [[Category: Berardi, A]] | + | [[Category: Mus musculus]] |
| - | [[Category: Corral-Rodriguez, M]] | + | [[Category: Berardi A]] |
| - | [[Category: Degano, M]] | + | [[Category: Corral-Rodriguez M]] |
| - | [[Category: Martin, F]] | + | [[Category: Degano M]] |
| - | [[Category: Musco, G]] | + | [[Category: Martin F]] |
| - | [[Category: Quilici, G]] | + | [[Category: Musco G]] |
| - | [[Category: Spiliotopoulos, D]] | + | [[Category: Quilici G]] |
| - | [[Category: Tonon, G]] | + | [[Category: Spiliotopoulos D]] |
| - | [[Category: C2hr]]
| + | [[Category: Tonon G]] |
| - | [[Category: Nizp1]]
| + | |
| - | [[Category: Nsd1]]
| + | |
| - | [[Category: Transcription]]
| + | |
| - | [[Category: Zinc finger]]
| + | |
| Structural highlights
Function
ZN496_MOUSE DNA-binding transcription factor that can both act as an activator and a repressor.[1] [2]
Publication Abstract from PubMed
Sotos syndrome is an overgrowth syndrome caused by mutations within the functional domains of NSD1 gene coding for NSD1, a multidomain protein regulating chromatin structure and gene expression. In particular, PHDVC5HCHNSD1 tandem domain, composed by a classical (PHDV) and an atypical (C5HCH) plant homeo-domain (PHD) finger, is target of several pathological missense-mutations. PHDVC5HCHNSD1 is also crucial for NSD1-dependent transcriptional regulation and interacts with the C2HR domain of transcriptional repressor Nizp1 (C2HRNizp1) in vitro. To get molecular insights into the mechanisms dictating the patho-physiological relevance of the PHD finger tandem domain, we solved its solution structure and provided a structural rationale for the effects of seven Sotos syndrome point-mutations. To investigate PHDVC5HCHNSD1 role as structural platform for multiple interactions, we characterized its binding to histone H3 peptides and to C2HRNizp1 by ITC and NMR. We observed only very weak electrostatic interactions with histone H3 N-terminal tails, conversely we proved specific binding to C2HRNizp1. We solved C2HRNizp1 solution structure and generated a 3D model of the complex, corroborated by site-directed mutagenesis. We suggest a mechanistic scenario where NSD1 interactions with cofactors such as Nizp1 are impaired by PHDVC5HCHNSD1 pathological mutations, thus impacting on the repression of growth-promoting genes, leading to overgrowth conditions.
Structural basis for PHDVC5HCHNSD1-C2HRNizp1 interaction: implications for Sotos syndrome.,Berardi A, Quilici G, Spiliotopoulos D, Corral-Rodriguez MA, Martin-Garcia F, Degano M, Tonon G, Ghitti M, Musco G Nucleic Acids Res. 2016 Feb 20. pii: gkw103. PMID:26896805[3]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Nielsen AL, Jorgensen P, Lerouge T, Cervino M, Chambon P, Losson R. Nizp1, a novel multitype zinc finger protein that interacts with the NSD1 histone lysine methyltransferase through a unique C2HR motif. Mol Cell Biol. 2004 Jun;24(12):5184-96. PMID:15169884 doi:http://dx.doi.org/10.1128/MCB.24.12.5184-5196.2004
- ↑ Mysliwiec MR, Kim TG, Lee Y. Characterization of zinc finger protein 496 that interacts with Jumonji/Jarid2. FEBS Lett. 2007 Jun 12;581(14):2633-40. Epub 2007 May 11. PMID:17521633 doi:http://dx.doi.org/10.1016/j.febslet.2007.05.006
- ↑ Berardi A, Quilici G, Spiliotopoulos D, Corral-Rodriguez MA, Martin-Garcia F, Degano M, Tonon G, Ghitti M, Musco G. Structural basis for PHDVC5HCHNSD1-C2HRNizp1 interaction: implications for Sotos syndrome. Nucleic Acids Res. 2016 Feb 20. pii: gkw103. PMID:26896805 doi:http://dx.doi.org/10.1093/nar/gkw103
|